Dolphin rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068EWX6|A0A068EWX6_9RHAB Nucleocapsid protein OS=Dolphin rhabdovirus OX=1511639 PE=4 SV=1
MM1 pKa = 7.14MMTRR5 pKa = 11.84RR6 pKa = 11.84PLKK9 pKa = 10.23IEE11 pKa = 3.74YY12 pKa = 11.04DD13 pKa = 3.48MDD15 pKa = 3.89KK16 pKa = 11.41LEE18 pKa = 4.79ASLKK22 pKa = 10.13EE23 pKa = 3.7ADD25 pKa = 4.39EE26 pKa = 4.5IEE28 pKa = 4.4GANEE32 pKa = 4.64GISEE36 pKa = 4.21RR37 pKa = 11.84MSDD40 pKa = 3.54LKK42 pKa = 11.17SLNEE46 pKa = 4.14SLDD49 pKa = 3.76DD50 pKa = 5.89LLAEE54 pKa = 5.43DD55 pKa = 5.14DD56 pKa = 3.62WAEE59 pKa = 3.85QGGIEE64 pKa = 4.29TDD66 pKa = 3.44AEE68 pKa = 4.33ADD70 pKa = 4.03DD71 pKa = 4.03EE72 pKa = 4.7HH73 pKa = 7.07EE74 pKa = 4.53SAVKK78 pKa = 10.73SSDD81 pKa = 2.88VDD83 pKa = 3.69MNPSDD88 pKa = 4.79DD89 pKa = 5.13AWDD92 pKa = 3.69SDD94 pKa = 4.5CFVPPDD100 pKa = 3.22IPGYY104 pKa = 6.29EE105 pKa = 3.83TRR107 pKa = 11.84GYY109 pKa = 10.46KK110 pKa = 10.17LSNSITPATRR120 pKa = 11.84LAILKK125 pKa = 8.22EE126 pKa = 3.85VSKK129 pKa = 10.63IIEE132 pKa = 4.37DD133 pKa = 3.61LRR135 pKa = 11.84GDD137 pKa = 3.6MVIAPKK143 pKa = 10.78GDD145 pKa = 3.26TYY147 pKa = 11.37DD148 pKa = 3.73YY149 pKa = 11.59YY150 pKa = 12.06LMFPDD155 pKa = 6.14GYY157 pKa = 11.05FNNKK161 pKa = 9.39DD162 pKa = 3.5VGRR165 pKa = 11.84KK166 pKa = 9.0HH167 pKa = 6.12YY168 pKa = 9.96PGDD171 pKa = 4.54RR172 pKa = 11.84IPPTDD177 pKa = 4.8DD178 pKa = 3.64PPGADD183 pKa = 3.64KK184 pKa = 10.82TPEE187 pKa = 3.91GLKK190 pKa = 8.85TRR192 pKa = 11.84KK193 pKa = 9.87NGANDD198 pKa = 3.47DD199 pKa = 3.78KK200 pKa = 11.34NRR202 pKa = 11.84RR203 pKa = 11.84SVKK206 pKa = 9.45EE207 pKa = 3.98ANATAQKK214 pKa = 10.38SNKK217 pKa = 8.81LASEE221 pKa = 3.58IWEE224 pKa = 4.22TGVVVIAKK232 pKa = 9.89DD233 pKa = 3.76GKK235 pKa = 10.59SKK237 pKa = 10.79LRR239 pKa = 11.84LKK241 pKa = 10.2PDD243 pKa = 2.93KK244 pKa = 10.78LYY246 pKa = 10.34WEE248 pKa = 4.0RR249 pKa = 11.84VEE251 pKa = 5.71WFKK254 pKa = 11.15QWDD257 pKa = 4.06EE258 pKa = 4.82KK259 pKa = 11.7NMEE262 pKa = 4.19TLPRR266 pKa = 11.84SKK268 pKa = 10.03IIQHH272 pKa = 7.0LIRR275 pKa = 11.84KK276 pKa = 6.84TPMRR280 pKa = 11.84LTYY283 pKa = 9.17RR284 pKa = 11.84RR285 pKa = 11.84KK286 pKa = 10.47YY287 pKa = 10.09ILEE290 pKa = 4.01

Molecular weight: 33.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068EQH8|A0A068EQH8_9RHAB GDP polyribonucleotidyltransferase OS=Dolphin rhabdovirus OX=1511639 PE=4 SV=1
MM1 pKa = 7.39FKK3 pKa = 10.73SKK5 pKa = 10.66ALSLFRR11 pKa = 11.84KK12 pKa = 7.14TPKK15 pKa = 10.42DD16 pKa = 2.89KK17 pKa = 11.08TMNRR21 pKa = 11.84KK22 pKa = 9.52DD23 pKa = 3.3KK24 pKa = 11.22SPVKK28 pKa = 10.23RR29 pKa = 11.84VMKK32 pKa = 10.02YY33 pKa = 10.66NEE35 pKa = 4.07VADD38 pKa = 4.24SEE40 pKa = 5.31DD41 pKa = 3.61GFPLFKK47 pKa = 10.37PIPEE51 pKa = 4.05GTYY54 pKa = 9.98YY55 pKa = 10.8RR56 pKa = 11.84HH57 pKa = 6.04ITLKK61 pKa = 11.03VNFKK65 pKa = 10.78LSIVTKK71 pKa = 10.26EE72 pKa = 3.91PIEE75 pKa = 4.0NLMEE79 pKa = 4.62IYY81 pKa = 10.8LIGQHH86 pKa = 6.9ILDD89 pKa = 4.81NYY91 pKa = 10.0NGPARR96 pKa = 11.84SKK98 pKa = 10.81PMYY101 pKa = 9.21LALMIGGFNGLEE113 pKa = 4.23KK114 pKa = 10.51SHH116 pKa = 4.79QTSRR120 pKa = 11.84ITCYY124 pKa = 9.42EE125 pKa = 4.05RR126 pKa = 11.84EE127 pKa = 3.97FHH129 pKa = 7.0GPIDD133 pKa = 3.63FPYY136 pKa = 10.34YY137 pKa = 10.3RR138 pKa = 11.84RR139 pKa = 11.84DD140 pKa = 3.93PIDD143 pKa = 3.44WVIMPLSTAYY153 pKa = 8.54EE154 pKa = 4.37CSMKK158 pKa = 10.61GHH160 pKa = 6.36TEE162 pKa = 3.83VTVYY166 pKa = 11.25ASLTPTNMTGPSLAQFCEE184 pKa = 3.86GHH186 pKa = 5.84PRR188 pKa = 11.84MRR190 pKa = 11.84KK191 pKa = 8.98PPILDD196 pKa = 3.14TLTNFKK202 pKa = 10.31IDD204 pKa = 3.32TKK206 pKa = 10.92LKK208 pKa = 9.47NEE210 pKa = 3.92EE211 pKa = 3.58WHH213 pKa = 7.38LDD215 pKa = 3.42MSQCC219 pKa = 4.75

Molecular weight: 25.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3550

219

2086

710.0

81.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.62 ± 0.731

1.465 ± 0.275

5.859 ± 0.739

6.592 ± 0.648

4.0 ± 0.435

5.662 ± 0.402

2.535 ± 0.513

7.211 ± 0.404

6.873 ± 0.534

9.803 ± 1.114

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.268 ± 0.406

5.099 ± 0.517

4.704 ± 0.419

2.986 ± 0.299

5.296 ± 0.481

7.606 ± 0.316

5.775 ± 0.905

5.268 ± 0.426

1.746 ± 0.109

3.634 ± 0.173
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski