Acinetobacter phage vB_AbaP_Acibel007

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Beijerinckvirinae; Daemvirus; Acinetobacter virus Acibel007

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 53 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A075DXY1|A0A075DXY1_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaP_Acibel007 OX=1481187 GN=vB_AbaP_Acibel007_52 PE=4 SV=1
MM1 pKa = 7.83FDD3 pKa = 3.83RR4 pKa = 11.84FHH6 pKa = 7.22EE7 pKa = 4.76DD8 pKa = 2.99GEE10 pKa = 4.75IIHH13 pKa = 6.4EE14 pKa = 4.01PVYY17 pKa = 10.91LCNDD21 pKa = 3.63CGEE24 pKa = 4.44EE25 pKa = 4.33SPHH28 pKa = 7.57SEE30 pKa = 4.49LFHH33 pKa = 6.4ICCSEE38 pKa = 3.86CDD40 pKa = 3.8ALCPYY45 pKa = 10.38CEE47 pKa = 4.34SDD49 pKa = 5.32DD50 pKa = 5.24LEE52 pKa = 4.34EE53 pKa = 4.15LL54 pKa = 3.83

Molecular weight: 6.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A075DXY3|A0A075DXY3_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaP_Acibel007 OX=1481187 GN=vB_AbaP_Acibel007_15 PE=4 SV=1
MM1 pKa = 7.44SNSIRR6 pKa = 11.84IGRR9 pKa = 11.84LTLNMGNVTVGVTRR23 pKa = 11.84HH24 pKa = 4.98QLSLFMQYY32 pKa = 10.16SAYY35 pKa = 9.82QSKK38 pKa = 9.75FF39 pKa = 3.13

Molecular weight: 4.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

53

0

53

13310

39

1049

251.1

28.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.58 ± 0.352

1.142 ± 0.159

6.228 ± 0.2

5.8 ± 0.265

3.711 ± 0.153

7.077 ± 0.308

2.119 ± 0.137

5.327 ± 0.221

6.379 ± 0.293

8.64 ± 0.217

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.855 ± 0.176

5.049 ± 0.294

3.441 ± 0.151

4.688 ± 0.299

4.733 ± 0.193

5.725 ± 0.294

6.138 ± 0.277

7.107 ± 0.276

1.157 ± 0.082

4.102 ± 0.224
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski