Paspalum dilatatum striate mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7FHL5|J7FHL5_9GEMI Capsid protein OS=Paspalum dilatatum striate mosaic virus OX=1196236 PE=3 SV=1
MM1 pKa = 7.72AEE3 pKa = 4.14YY4 pKa = 9.93PEE6 pKa = 4.5SALVVSGAIPRR17 pKa = 11.84RR18 pKa = 11.84SQDD21 pKa = 2.85EE22 pKa = 4.34SFASSLKK29 pKa = 9.1VTALSLFAAFIAACVLSFIYY49 pKa = 8.53KK50 pKa = 7.87TCIAEE55 pKa = 5.06FITQYY60 pKa = 10.79RR61 pKa = 11.84LSGLSSVTSSGFGRR75 pKa = 11.84TVEE78 pKa = 4.81DD79 pKa = 4.25PPAVPRR85 pKa = 11.84TASEE89 pKa = 3.87VSIPVAVRR97 pKa = 11.84SGIPPVISGPSGIPGNN113 pKa = 3.95

Molecular weight: 11.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7FHL5|J7FHL5_9GEMI Capsid protein OS=Paspalum dilatatum striate mosaic virus OX=1196236 PE=3 SV=1
MM1 pKa = 7.64PSSSKK6 pKa = 10.36RR7 pKa = 11.84KK8 pKa = 9.43RR9 pKa = 11.84GSTSGTKK16 pKa = 9.53RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 9.75KK20 pKa = 10.17PRR22 pKa = 11.84TTKK25 pKa = 8.29WTGSRR30 pKa = 11.84SASRR34 pKa = 11.84EE35 pKa = 3.83ALQVQTFTWSEE46 pKa = 3.89DD47 pKa = 3.32QAFNAGGRR55 pKa = 11.84AILLSAYY62 pKa = 8.97TRR64 pKa = 11.84GSGEE68 pKa = 4.04NQRR71 pKa = 11.84KK72 pKa = 7.52SQEE75 pKa = 4.02TITYY79 pKa = 9.71KK80 pKa = 10.51VALNLGVSASATVLKK95 pKa = 9.71YY96 pKa = 10.56CCSSQPICWLVYY108 pKa = 10.45DD109 pKa = 4.53KK110 pKa = 10.89TPTGITDD117 pKa = 4.22LTPSDD122 pKa = 3.74IFDD125 pKa = 3.86VPSGLQNWPSTWKK138 pKa = 9.85VKK140 pKa = 10.64RR141 pKa = 11.84EE142 pKa = 3.66ASHH145 pKa = 6.57RR146 pKa = 11.84FVVKK150 pKa = 10.34RR151 pKa = 11.84RR152 pKa = 11.84WPFKK156 pKa = 10.57LEE158 pKa = 4.42CNGSTFQKK166 pKa = 10.53DD167 pKa = 3.78YY168 pKa = 11.5TNLPVCNTQNLVSVTRR184 pKa = 11.84FAKK187 pKa = 10.25GLGVRR192 pKa = 11.84TEE194 pKa = 4.04WKK196 pKa = 8.62DD197 pKa = 3.19TTTAEE202 pKa = 4.08SSDD205 pKa = 3.35IKK207 pKa = 11.11GGALYY212 pKa = 10.55LVIAPANGLVFTARR226 pKa = 11.84GVIKK230 pKa = 10.39CYY232 pKa = 10.02FKK234 pKa = 11.2SVGNQQ239 pKa = 2.8

Molecular weight: 26.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1030

113

366

257.5

28.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.155 ± 0.629

2.33 ± 0.197

3.981 ± 0.454

6.311 ± 1.012

4.66 ± 0.393

6.019 ± 0.537

2.233 ± 0.736

3.592 ± 0.736

6.699 ± 0.857

7.087 ± 0.444

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.359 ± 0.322

2.524 ± 0.565

6.408 ± 0.724

4.272 ± 0.46

6.117 ± 0.428

8.835 ± 1.457

6.117 ± 1.336

7.476 ± 0.368

1.942 ± 0.402

3.883 ± 0.405
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski