Gordonia Phage Lollipop1437

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 93 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6EKC7|A0A4Y6EKC7_9CAUD POU-specific domain-containing protein OS=Gordonia Phage Lollipop1437 OX=2588505 GN=72 PE=4 SV=1
MM1 pKa = 7.17KK2 pKa = 9.87TRR4 pKa = 11.84IAIFLLAAVIFVFGPVAAALTGEE27 pKa = 4.52AEE29 pKa = 4.19ATPTKK34 pKa = 9.88PCSISTATGSAPCPPPIISTNGDD57 pKa = 3.59QIGGGANSEE66 pKa = 4.05PVNMGEE72 pKa = 5.12LPRR75 pKa = 11.84TGPDD79 pKa = 3.21YY80 pKa = 10.7TYY82 pKa = 10.29EE83 pKa = 4.11APTYY87 pKa = 9.86FDD89 pKa = 3.67EE90 pKa = 5.4PEE92 pKa = 4.55APEE95 pKa = 4.68APAEE99 pKa = 4.26PEE101 pKa = 3.57TDD103 pKa = 3.31EE104 pKa = 4.5

Molecular weight: 10.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6ETH5|A0A4Y6ETH5_9CAUD Uncharacterized protein OS=Gordonia Phage Lollipop1437 OX=2588505 GN=75 PE=4 SV=1
MM1 pKa = 7.42TIVNRR6 pKa = 11.84VPTLKK11 pKa = 10.38PRR13 pKa = 11.84GRR15 pKa = 11.84CGFVRR20 pKa = 11.84EE21 pKa = 4.35SKK23 pKa = 10.44LGAMLRR29 pKa = 11.84CTLVAGHH36 pKa = 7.09DD37 pKa = 3.67EE38 pKa = 4.44GRR40 pKa = 11.84PHH42 pKa = 7.16RR43 pKa = 11.84PAGSPSRR50 pKa = 11.84HH51 pKa = 4.99YY52 pKa = 9.79FAPLSDD58 pKa = 3.81FDD60 pKa = 5.45EE61 pKa = 4.64NGQMIFKK68 pKa = 10.42GRR70 pKa = 11.84IINAPRR76 pKa = 11.84DD77 pKa = 3.61LYY79 pKa = 10.74RR80 pKa = 11.84GYY82 pKa = 10.0IDD84 pKa = 3.28PFEE87 pKa = 4.97RR88 pKa = 11.84IKK90 pKa = 10.97ARR92 pKa = 11.84QAAAEE97 pKa = 4.06RR98 pKa = 11.84VLRR101 pKa = 11.84APLDD105 pKa = 3.88FSHH108 pKa = 7.69LDD110 pKa = 3.46GLRR113 pKa = 11.84KK114 pKa = 10.14GGLLL118 pKa = 3.66

Molecular weight: 13.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

93

0

93

20929

37

1808

225.0

24.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.106 ± 0.411

0.674 ± 0.1

7.201 ± 0.312

6.68 ± 0.269

3.306 ± 0.14

8.744 ± 0.369

1.926 ± 0.163

5.046 ± 0.167

4.281 ± 0.277

7.578 ± 0.22

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.384 ± 0.112

3.283 ± 0.156

5.39 ± 0.167

3.077 ± 0.126

7.33 ± 0.352

5.213 ± 0.239

6.369 ± 0.221

6.947 ± 0.206

1.983 ± 0.13

2.485 ± 0.167
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski