Soybean cyst nematode socyvirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Nyamiviridae; Socyvirus

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G0WXQ0|G0WXQ0_9MONO Uncharacterized protein OS=Soybean cyst nematode socyvirus OX=1034377 PE=4 SV=1
MM1 pKa = 7.38SASQRR6 pKa = 11.84GSTSQPSGSNGQPTPSPDD24 pKa = 3.29RR25 pKa = 11.84HH26 pKa = 5.59WSSTPSLLNVLQSAVDD42 pKa = 3.72RR43 pKa = 11.84AATFQTTARR52 pKa = 11.84PPPNPNSLAPPPVVVEE68 pKa = 4.7GGSDD72 pKa = 3.45MEE74 pKa = 4.81PDD76 pKa = 3.43EE77 pKa = 5.63EE78 pKa = 5.29EE79 pKa = 4.3DD80 pKa = 4.18TEE82 pKa = 4.34HH83 pKa = 6.65QNKK86 pKa = 9.31GPNDD90 pKa = 3.84DD91 pKa = 4.41EE92 pKa = 4.75VADD95 pKa = 4.03SQEE98 pKa = 4.21SGGNSDD104 pKa = 5.34DD105 pKa = 4.63HH106 pKa = 7.59PDD108 pKa = 3.84DD109 pKa = 5.97AGDD112 pKa = 3.74TNSAGLLTQLAAALAVPGTEE132 pKa = 3.96HH133 pKa = 7.18FMGTLAQDD141 pKa = 3.45LHH143 pKa = 6.41GLPSRR148 pKa = 11.84EE149 pKa = 3.95KK150 pKa = 10.8DD151 pKa = 3.29RR152 pKa = 11.84LFAALLINIAYY163 pKa = 9.11RR164 pKa = 11.84QANPPPPPPAPSAIDD179 pKa = 3.53PDD181 pKa = 3.65LAARR185 pKa = 11.84LNAMNIRR192 pKa = 11.84IHH194 pKa = 5.06QLQVKK199 pKa = 9.85VGFDD203 pKa = 3.44TTDD206 pKa = 3.37PLANPPIPPVASYY219 pKa = 11.34GGGLPFGSGPSNPDD233 pKa = 2.52MTTAFAGYY241 pKa = 10.16GRR243 pKa = 11.84GSTTMSTAPKK253 pKa = 10.05VPQTPEE259 pKa = 3.45QTPEE263 pKa = 3.66EE264 pKa = 4.34KK265 pKa = 10.41AKK267 pKa = 10.68KK268 pKa = 9.96VADD271 pKa = 3.96KK272 pKa = 10.27LAKK275 pKa = 9.49MKK277 pKa = 10.45NQNLL281 pKa = 3.62

Molecular weight: 29.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G0WXQ1|G0WXQ1_9MONO Glycoprotein OS=Soybean cyst nematode socyvirus OX=1034377 PE=4 SV=1
MM1 pKa = 7.85SPMKK5 pKa = 10.59SSLDD9 pKa = 3.11PWRR12 pKa = 11.84IRR14 pKa = 11.84TSDD17 pKa = 3.49RR18 pKa = 11.84QALDD22 pKa = 3.34PGYY25 pKa = 7.72WTAEE29 pKa = 3.61RR30 pKa = 11.84RR31 pKa = 11.84QLRR34 pKa = 11.84DD35 pKa = 3.33LLTSITVSRR44 pKa = 11.84SPSPTSRR51 pKa = 11.84PTATVGTQTDD61 pKa = 4.06PAHH64 pKa = 6.55CMCCGKK70 pKa = 9.96VHH72 pKa = 6.78LVTYY76 pKa = 9.99KK77 pKa = 10.18IVHH80 pKa = 6.21

Molecular weight: 9.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3420

80

2086

684.0

76.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.538 ± 1.754

1.901 ± 0.416

5.614 ± 0.329

5.234 ± 0.314

2.953 ± 0.528

6.023 ± 0.743

2.427 ± 0.135

5.351 ± 0.595

4.678 ± 0.391

10.731 ± 0.968

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.953 ± 0.266

3.187 ± 0.37

6.491 ± 1.016

3.713 ± 0.381

6.14 ± 0.838

6.404 ± 0.688

7.164 ± 0.402

5.906 ± 0.231

1.696 ± 0.271

2.895 ± 0.434
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski