Palleronia marisminoris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Palleronia

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3664 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y5THL1|A0A1Y5THL1_9RHOB Aminoglycoside N(3)-acetyltransferase OS=Palleronia marisminoris OX=315423 GN=yokD PE=3 SV=1
MM1 pKa = 7.16TFKK4 pKa = 8.65TTLYY8 pKa = 9.64TGAAMVALGTGMAQAQDD25 pKa = 3.61FVFPKK30 pKa = 10.97GEE32 pKa = 4.32GAFSWDD38 pKa = 3.4SLEE41 pKa = 4.5EE42 pKa = 3.82FASNHH47 pKa = 6.71DD48 pKa = 3.86YY49 pKa = 11.06SGQSIDD55 pKa = 3.99ITGPWTGADD64 pKa = 3.57AEE66 pKa = 4.33LMEE69 pKa = 4.69SVVAYY74 pKa = 10.21FEE76 pKa = 4.4EE77 pKa = 4.49ATGASVNYY85 pKa = 9.88SGSDD89 pKa = 3.11SFEE92 pKa = 3.74QDD94 pKa = 2.53IVISTEE100 pKa = 3.85ANSAPNIAVFPQPGLLADD118 pKa = 4.5LAQRR122 pKa = 11.84GAITPLEE129 pKa = 4.47PEE131 pKa = 3.62TAEE134 pKa = 4.25WIRR137 pKa = 11.84EE138 pKa = 4.02NYY140 pKa = 9.31SAGEE144 pKa = 4.11SWVDD148 pKa = 3.31LASFEE153 pKa = 4.5GEE155 pKa = 3.86GGEE158 pKa = 3.94EE159 pKa = 3.65HH160 pKa = 7.24LYY162 pKa = 10.93AFPYY166 pKa = 10.05KK167 pKa = 9.8IDD169 pKa = 3.59VKK171 pKa = 10.85SLVWYY176 pKa = 10.29VPEE179 pKa = 3.88QFEE182 pKa = 4.18EE183 pKa = 4.0AGYY186 pKa = 9.5EE187 pKa = 4.09VPEE190 pKa = 4.31TYY192 pKa = 10.29EE193 pKa = 3.96GLKK196 pKa = 10.62EE197 pKa = 4.02LTQQMADD204 pKa = 3.58DD205 pKa = 6.02GVTPWCIGLGSGAATGWPATDD226 pKa = 3.12WVEE229 pKa = 4.87DD230 pKa = 3.63LMLRR234 pKa = 11.84TATPEE239 pKa = 3.91QYY241 pKa = 10.55DD242 pKa = 3.14AWVANDD248 pKa = 4.15LAFDD252 pKa = 3.74SPEE255 pKa = 3.76VVNAIEE261 pKa = 4.26EE262 pKa = 4.48YY263 pKa = 11.24GFFLQDD269 pKa = 3.11GFVNGGRR276 pKa = 11.84EE277 pKa = 3.91AAATTDD283 pKa = 4.18FRR285 pKa = 11.84DD286 pKa = 3.76SPSGLFQFPPEE297 pKa = 4.47CYY299 pKa = 8.14MHH301 pKa = 6.63KK302 pKa = 10.01QATFIPTFFPEE313 pKa = 4.54GSEE316 pKa = 4.0VGTDD320 pKa = 2.69VDD322 pKa = 4.83FFYY325 pKa = 11.09FPAPEE330 pKa = 5.09GGDD333 pKa = 3.25AEE335 pKa = 4.41QPVLGAGTMFAITNDD350 pKa = 3.56SEE352 pKa = 4.2PARR355 pKa = 11.84GFIEE359 pKa = 4.23YY360 pKa = 10.11LQTPLAHH367 pKa = 6.86EE368 pKa = 4.22IWAAQGGLLTPHH380 pKa = 6.75TGINPEE386 pKa = 4.0VFGTDD391 pKa = 3.29DD392 pKa = 3.5QRR394 pKa = 11.84ALNDD398 pKa = 3.39ILLDD402 pKa = 3.47ATTFRR407 pKa = 11.84FDD409 pKa = 5.22ASDD412 pKa = 3.81LMPGEE417 pKa = 4.37IGAGAFWTQMVEE429 pKa = 4.28FTTGSQDD436 pKa = 3.18AQATGEE442 pKa = 4.5AIQSRR447 pKa = 11.84WDD449 pKa = 3.34QLSNN453 pKa = 3.42

Molecular weight: 49.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y5T7K7|A0A1Y5T7K7_9RHOB Sec-independent protein translocase protein TatB OS=Palleronia marisminoris OX=315423 GN=tatB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.3KK41 pKa = 10.65LSAA44 pKa = 3.91

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3664

0

3664

1119639

29

3005

305.6

33.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.471 ± 0.059

0.844 ± 0.012

6.267 ± 0.042

6.232 ± 0.035

3.596 ± 0.031

8.893 ± 0.039

2.053 ± 0.019

5.022 ± 0.029

2.559 ± 0.033

9.994 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.657 ± 0.021

2.334 ± 0.025

5.25 ± 0.035

2.957 ± 0.024

7.328 ± 0.048

5.063 ± 0.028

5.519 ± 0.026

7.457 ± 0.033

1.401 ± 0.017

2.102 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski