Ilyobacter polytropus (strain ATCC 51220 / DSM 2926 / LMG 16218 / CuHBu1)

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Ilyobacter; Ilyobacter polytropus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2859 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E3H6Z4|E3H6Z4_ILYPC Binding-protein-dependent transport systems inner membrane component OS=Ilyobacter polytropus (strain ATCC 51220 / DSM 2926 / LMG 16218 / CuHBu1) OX=572544 GN=Ilyop_0726 PE=3 SV=1
MM1 pKa = 7.0KK2 pKa = 10.14RR3 pKa = 11.84VMIFLMFLILVSGMAYY19 pKa = 10.08SEE21 pKa = 4.06TRR23 pKa = 11.84TVYY26 pKa = 10.95LIVPADD32 pKa = 3.91AGTLSYY38 pKa = 11.05YY39 pKa = 10.98AVDD42 pKa = 3.76EE43 pKa = 4.62YY44 pKa = 11.01EE45 pKa = 5.0AEE47 pKa = 4.29VTITASTEE55 pKa = 3.91TTSYY59 pKa = 10.91LGNSNLKK66 pKa = 10.4LVTLDD71 pKa = 4.03ASTSDD76 pKa = 3.49TFKK79 pKa = 11.42LMAKK83 pKa = 10.15YY84 pKa = 10.21KK85 pKa = 10.98LNDD88 pKa = 3.03KK89 pKa = 10.85YY90 pKa = 11.73YY91 pKa = 10.94FLISSNTDD99 pKa = 3.0TEE101 pKa = 4.45SDD103 pKa = 3.77DD104 pKa = 3.6NLEE107 pKa = 3.86ILEE110 pKa = 4.46TNFVSTNSPSEE121 pKa = 4.11VYY123 pKa = 10.67NVFGSFDD130 pKa = 4.45DD131 pKa = 3.99YY132 pKa = 11.52PGIKK136 pKa = 9.61IQDD139 pKa = 3.82DD140 pKa = 3.81VRR142 pKa = 11.84LSMIPVTDD150 pKa = 3.69EE151 pKa = 3.72FTEE154 pKa = 4.54FTDD157 pKa = 5.24GIVDD161 pKa = 3.8EE162 pKa = 5.58VYY164 pKa = 10.92LSDD167 pKa = 6.13DD168 pKa = 3.75DD169 pKa = 3.73EE170 pKa = 4.9TYY172 pKa = 11.77NNVAVNGYY180 pKa = 10.8AGISPNNSTTFTIKK194 pKa = 10.62EE195 pKa = 4.12KK196 pKa = 10.75DD197 pKa = 3.6SEE199 pKa = 4.6TEE201 pKa = 3.93TVYY204 pKa = 11.13TDD206 pKa = 4.14LKK208 pKa = 10.0TISDD212 pKa = 4.58PLTYY216 pKa = 10.36SYY218 pKa = 11.43TDD220 pKa = 3.72DD221 pKa = 5.48DD222 pKa = 5.51GNDD225 pKa = 3.43HH226 pKa = 6.08YY227 pKa = 10.12TVTVTYY233 pKa = 10.58AQFRR237 pKa = 11.84AKK239 pKa = 8.9NTNSSTFTYY248 pKa = 10.33DD249 pKa = 3.0GKK251 pKa = 10.72NDD253 pKa = 3.52GNEE256 pKa = 4.28TYY258 pKa = 10.12TLTGEE263 pKa = 4.32MVLDD267 pKa = 4.12LYY269 pKa = 11.12AYY271 pKa = 10.74NSGQGSYY278 pKa = 7.47WMEE281 pKa = 4.77IIPEE285 pKa = 4.36GDD287 pKa = 3.47TVVLIDD293 pKa = 5.43DD294 pKa = 3.99IGVTAEE300 pKa = 4.15RR301 pKa = 11.84EE302 pKa = 3.46IDD304 pKa = 3.6ATSKK308 pKa = 11.15ASDD311 pKa = 3.28KK312 pKa = 11.26SKK314 pKa = 11.13SRR316 pKa = 11.84DD317 pKa = 3.65TNIKK321 pKa = 9.44TSLIDD326 pKa = 3.31SDD328 pKa = 3.98NFIIKK333 pKa = 10.36NIEE336 pKa = 3.75EE337 pKa = 4.09

Molecular weight: 37.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E3HBK3|E3HBK3_ILYPC Uncharacterized protein OS=Ilyobacter polytropus (strain ATCC 51220 / DSM 2926 / LMG 16218 / CuHBu1) OX=572544 GN=Ilyop_1928 PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.3KK3 pKa = 10.24RR4 pKa = 11.84LVLLLTLILIVSSVSFAATSSRR26 pKa = 11.84RR27 pKa = 11.84ATSGGWAVSSRR38 pKa = 11.84RR39 pKa = 11.84ATSGGWAVSSRR50 pKa = 11.84RR51 pKa = 11.84ATSGGWAVSSRR62 pKa = 11.84RR63 pKa = 11.84ATSGGWAVSSRR74 pKa = 11.84RR75 pKa = 11.84ATSGGWAVSSRR86 pKa = 11.84RR87 pKa = 11.84ATSGGWAVSSRR98 pKa = 11.84RR99 pKa = 11.84ATSGGWW105 pKa = 2.96

Molecular weight: 10.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2859

0

2859

873442

30

1489

305.5

34.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.802 ± 0.052

0.943 ± 0.019

5.464 ± 0.038

8.167 ± 0.049

4.631 ± 0.037

7.092 ± 0.042

1.473 ± 0.017

9.146 ± 0.046

9.398 ± 0.051

9.104 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.822 ± 0.021

5.088 ± 0.032

2.923 ± 0.025

2.102 ± 0.018

3.656 ± 0.031

6.222 ± 0.035

4.79 ± 0.03

6.542 ± 0.035

0.703 ± 0.014

3.936 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski