Escherichia phage vB_EcoD_SU57

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Braunvirinae; Rtpvirus; unclassified Rtpvirus

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 77 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D5JLL7|A0A7D5JLL7_9CAUD Uncharacterized protein OS=Escherichia phage vB_EcoD_SU57 OX=2743969 GN=SU57_00015 PE=4 SV=1
MM1 pKa = 7.04ITATCVRR8 pKa = 11.84ANGSFTLFEE17 pKa = 4.9DD18 pKa = 4.25YY19 pKa = 10.96EE20 pKa = 5.2FNFHH24 pKa = 6.51SDD26 pKa = 3.35EE27 pKa = 4.32VTVLSDD33 pKa = 3.82DD34 pKa = 3.41GCYY37 pKa = 9.38WFVSYY42 pKa = 10.77QGDD45 pKa = 4.0GYY47 pKa = 10.83YY48 pKa = 10.78GCRR51 pKa = 11.84DD52 pKa = 3.41AEE54 pKa = 4.22GKK56 pKa = 9.66EE57 pKa = 3.99VSFLVEE63 pKa = 3.75

Molecular weight: 7.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7D5FV80|A0A7D5FV80_9CAUD Minor tail protein OS=Escherichia phage vB_EcoD_SU57 OX=2743969 GN=SU57_00037 PE=4 SV=1
MM1 pKa = 6.8NTVDD5 pKa = 4.7KK6 pKa = 10.59RR7 pKa = 11.84TINGNNGTIRR17 pKa = 11.84TKK19 pKa = 10.73DD20 pKa = 2.77KK21 pKa = 10.57KK22 pKa = 9.35QRR24 pKa = 11.84KK25 pKa = 8.37RR26 pKa = 11.84PSGYY30 pKa = 10.06YY31 pKa = 8.95VLKK34 pKa = 10.9DD35 pKa = 3.51EE36 pKa = 4.52VRR38 pKa = 11.84AGLRR42 pKa = 11.84ARR44 pKa = 11.84LEE46 pKa = 3.84IVLDD50 pKa = 3.88FFGTKK55 pKa = 10.47ANIAKK60 pKa = 9.21QLKK63 pKa = 7.86VTPQTVEE70 pKa = 3.38EE71 pKa = 4.31WFNRR75 pKa = 11.84GMISARR81 pKa = 11.84GAQLSHH87 pKa = 6.65NYY89 pKa = 9.69YY90 pKa = 10.39KK91 pKa = 10.17RR92 pKa = 11.84TGEE95 pKa = 3.94GFRR98 pKa = 11.84ATFCRR103 pKa = 11.84PDD105 pKa = 3.38LQFDD109 pKa = 4.36GNGKK113 pKa = 8.92PLTLRR118 pKa = 11.84CKK120 pKa = 9.49KK121 pKa = 9.98RR122 pKa = 11.84HH123 pKa = 4.86MLRR126 pKa = 11.84VVTEE130 pKa = 4.33AEE132 pKa = 4.14LATKK136 pKa = 9.16PEE138 pKa = 4.04CRR140 pKa = 11.84SWRR143 pKa = 11.84KK144 pKa = 9.4IKK146 pKa = 10.36AANEE150 pKa = 3.74AARR153 pKa = 11.84KK154 pKa = 9.56AKK156 pKa = 9.88EE157 pKa = 3.61

Molecular weight: 18.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

77

0

77

13695

38

1128

177.9

19.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.229 ± 0.49

1.358 ± 0.189

6.112 ± 0.257

6.659 ± 0.337

4.082 ± 0.206

7.645 ± 0.365

1.438 ± 0.226

6.93 ± 0.224

6.637 ± 0.448

6.922 ± 0.293

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.636 ± 0.287

5.148 ± 0.324

3.023 ± 0.22

3.746 ± 0.38

4.578 ± 0.198

7.017 ± 0.321

5.469 ± 0.339

7.171 ± 0.318

1.19 ± 0.097

4.009 ± 0.226
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski