Podoviridae sp. ct2cs2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 68 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W5W6|A0A5Q2W5W6_9CAUD Tail fiber adhesin OS=Podoviridae sp. ct2cs2 OX=2656707 PE=4 SV=1
MM1 pKa = 7.41QIEE4 pKa = 4.79LDD6 pKa = 4.1YY7 pKa = 10.65ITEE10 pKa = 4.26ALHH13 pKa = 7.47AIDD16 pKa = 6.28LNLEE20 pKa = 4.07DD21 pKa = 4.29VNRR24 pKa = 11.84GITPSGYY31 pKa = 8.59LTINQYY37 pKa = 11.07LDD39 pKa = 3.22DD40 pKa = 3.9MRR42 pKa = 11.84YY43 pKa = 9.04QLSEE47 pKa = 4.38LNTEE51 pKa = 4.24ISNLEE56 pKa = 3.96INN58 pKa = 4.0

Molecular weight: 6.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W272|A0A5Q2W272_9CAUD Endolysin OS=Podoviridae sp. ct2cs2 OX=2656707 PE=3 SV=1
MM1 pKa = 6.83THH3 pKa = 5.09YY4 pKa = 10.54QIRR7 pKa = 11.84KK8 pKa = 4.79QWRR11 pKa = 11.84IKK13 pKa = 10.54LHH15 pKa = 6.57AKK17 pKa = 9.35RR18 pKa = 11.84CKK20 pKa = 10.91DD21 pKa = 3.06NDD23 pKa = 3.41QSTEE27 pKa = 3.76RR28 pKa = 11.84YY29 pKa = 9.45KK30 pKa = 10.78RR31 pKa = 11.84DD32 pKa = 3.13AKK34 pKa = 10.9VLNRR38 pKa = 11.84CMSIYY43 pKa = 10.29KK44 pKa = 9.94IEE46 pKa = 4.23GTRR49 pKa = 11.84ATWGQQ54 pKa = 3.14

Molecular weight: 6.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

0

68

11624

30

785

170.9

18.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.379 ± 0.551

1.067 ± 0.169

5.136 ± 0.285

5.936 ± 0.606

3.734 ± 0.233

7.528 ± 0.623

1.394 ± 0.228

6.237 ± 0.253

6.005 ± 0.539

7.614 ± 0.414

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.392 ± 0.202

5.945 ± 0.39

3.484 ± 0.251

4.181 ± 0.35

4.069 ± 0.282

7.416 ± 0.55

8.173 ± 0.705

5.893 ± 0.262

1.316 ± 0.166

4.104 ± 0.23
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski