Lodeiro virus

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D9CFP5|A0A1D9CFP5_9VIRU ORF3 OS=Lodeiro virus OX=1911102 PE=4 SV=1
MM1 pKa = 7.0MVSLTGCFLLIRR13 pKa = 11.84LLIILKK19 pKa = 9.99IPVVLEE25 pKa = 3.82SKK27 pKa = 9.92YY28 pKa = 11.25VKK30 pKa = 10.24DD31 pKa = 3.41LHH33 pKa = 6.84PYY35 pKa = 8.63IANFSQIHH43 pKa = 5.63SLLVGRR49 pKa = 11.84RR50 pKa = 11.84AYY52 pKa = 10.94LEE54 pKa = 4.56DD55 pKa = 4.32FNFLQRR61 pKa = 11.84NIIMDD66 pKa = 4.43VKK68 pKa = 8.12PHH70 pKa = 6.72RR71 pKa = 11.84YY72 pKa = 9.35VMQDD76 pKa = 2.8RR77 pKa = 11.84DD78 pKa = 3.13EE79 pKa = 4.25WNIDD83 pKa = 3.06NCIKK87 pKa = 10.66FIEE90 pKa = 4.36THH92 pKa = 5.96SLIPDD97 pKa = 4.08DD98 pKa = 4.45CQSILGDD105 pKa = 3.65EE106 pKa = 4.64CEE108 pKa = 4.17GATFKK113 pKa = 11.11SIEE116 pKa = 4.48TKK118 pKa = 8.79WHH120 pKa = 5.66GLQLGICHH128 pKa = 6.51PTPNCTFQDD137 pKa = 3.68FDD139 pKa = 4.31QSYY142 pKa = 8.76QCGNAKK148 pKa = 9.61YY149 pKa = 10.28VLYY152 pKa = 10.68HH153 pKa = 7.25EE154 pKa = 4.54YY155 pKa = 10.38TFDD158 pKa = 2.94IPYY161 pKa = 10.43VVFVPVKK168 pKa = 10.38RR169 pKa = 11.84NNKK172 pKa = 5.79VTWTAILEE180 pKa = 4.24YY181 pKa = 10.96NEE183 pKa = 4.5EE184 pKa = 4.43DD185 pKa = 3.21LSKK188 pKa = 10.21YY189 pKa = 9.81QSPGSFSLKK198 pKa = 10.29SHH200 pKa = 6.14MQQSSYY206 pKa = 10.93YY207 pKa = 9.39IKK209 pKa = 10.63QLFDD213 pKa = 3.58RR214 pKa = 11.84SLPDD218 pKa = 3.27DD219 pKa = 3.91VKK221 pKa = 11.49YY222 pKa = 8.2EE223 pKa = 4.06TQIQQTEE230 pKa = 4.42CVEE233 pKa = 4.16SLPFYY238 pKa = 10.86DD239 pKa = 5.07ADD241 pKa = 3.69GFYY244 pKa = 10.69HH245 pKa = 7.24EE246 pKa = 5.46NIAYY250 pKa = 10.35LNHH253 pKa = 6.5DD254 pKa = 4.28WKK256 pKa = 11.16RR257 pKa = 11.84MCFSLAPQGSYY268 pKa = 10.73CDD270 pKa = 3.87SLWWVDD276 pKa = 4.17DD277 pKa = 4.1YY278 pKa = 11.83FDD280 pKa = 3.87KK281 pKa = 9.15TTLVKK286 pKa = 10.66ALLEE290 pKa = 4.47EE291 pKa = 4.3IPWYY295 pKa = 9.82IVYY298 pKa = 10.4HH299 pKa = 6.63DD300 pKa = 4.36WNSLKK305 pKa = 10.47QSIKK309 pKa = 10.86DD310 pKa = 3.53QVKK313 pKa = 8.83TDD315 pKa = 3.85CEE317 pKa = 4.18IEE319 pKa = 3.99NDD321 pKa = 2.72IHH323 pKa = 7.15LRR325 pKa = 11.84WNVTHH330 pKa = 7.5CYY332 pKa = 10.05QGDD335 pKa = 4.56FKK337 pKa = 11.42CMYY340 pKa = 10.65GPFPCSDD347 pKa = 3.11SANRR351 pKa = 11.84VSKK354 pKa = 10.87CLDD357 pKa = 3.31VEE359 pKa = 4.39EE360 pKa = 5.55HH361 pKa = 5.54FTSPVTFHH369 pKa = 6.34AVKK372 pKa = 10.41VVRR375 pKa = 11.84DD376 pKa = 3.79VVKK379 pKa = 10.93AILPYY384 pKa = 10.23IKK386 pKa = 9.85TIFTTVLGIIVDD398 pKa = 3.8VFNSVLVQLGLVFMLLTTASILVMVIKK425 pKa = 10.74FGLRR429 pKa = 11.84YY430 pKa = 9.54LDD432 pKa = 3.51SSLILLTLTLLLSTLGIDD450 pKa = 4.36LKK452 pKa = 11.12NSYY455 pKa = 10.24FISCILVLTASKK467 pKa = 10.36YY468 pKa = 9.62SKK470 pKa = 10.48VLEE473 pKa = 4.38RR474 pKa = 11.84YY475 pKa = 9.41VKK477 pKa = 10.58EE478 pKa = 4.02NN479 pKa = 3.03

Molecular weight: 55.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D9CFR9|A0A1D9CFR9_9VIRU ORF5 OS=Lodeiro virus OX=1911102 PE=4 SV=1
MM1 pKa = 7.38AKK3 pKa = 10.08KK4 pKa = 9.97YY5 pKa = 6.32QTRR8 pKa = 11.84RR9 pKa = 11.84TRR11 pKa = 11.84LTAVGTARR19 pKa = 11.84KK20 pKa = 9.58AIRR23 pKa = 11.84KK24 pKa = 6.76TKK26 pKa = 9.0TKK28 pKa = 10.52SPKK31 pKa = 8.07TQVLVVSNGKK41 pKa = 9.26RR42 pKa = 11.84KK43 pKa = 9.3SRR45 pKa = 11.84KK46 pKa = 9.08RR47 pKa = 11.84EE48 pKa = 3.69NKK50 pKa = 9.72KK51 pKa = 10.49LVGVEE56 pKa = 4.07GAYY59 pKa = 10.43HH60 pKa = 6.04SVVKK64 pKa = 10.39VLNEE68 pKa = 4.1PYY70 pKa = 10.02TLILIGLALLVIVNYY85 pKa = 10.31QNSKK89 pKa = 8.12TDD91 pKa = 3.48NVVTKK96 pKa = 10.73LADD99 pKa = 3.78TIGNQTSLGIWMKK112 pKa = 11.37ANVAKK117 pKa = 10.93VIGLAIMAPSVFTSPKK133 pKa = 9.75SIRR136 pKa = 11.84VPLAIGSLALVYY148 pKa = 10.03LVKK151 pKa = 10.67ALSLWNYY158 pKa = 9.02FSIAIAIRR166 pKa = 11.84VFFKK170 pKa = 11.29VKK172 pKa = 10.05DD173 pKa = 3.51QNIRR177 pKa = 11.84LIVFGLAFAMYY188 pKa = 10.13YY189 pKa = 9.96IGASS193 pKa = 3.3

Molecular weight: 21.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3157

109

2116

631.4

73.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.561 ± 0.773

1.742 ± 0.414

5.86 ± 0.824

7.507 ± 1.14

4.435 ± 0.537

4.53 ± 0.388

2.787 ± 0.319

6.525 ± 0.388

8.679 ± 0.877

8.933 ± 0.704

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.597 ± 0.325

4.023 ± 0.401

3.389 ± 0.15

3.833 ± 0.327

5.512 ± 0.673

6.937 ± 0.437

4.498 ± 0.639

7.697 ± 0.497

1.235 ± 0.152

4.72 ± 0.404
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski