Cohaesibacter celericrescens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Cohaesibacteraceae; Cohaesibacter

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4355 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N5XKE9|A0A2N5XKE9_9RHIZ Short-chain dehydrogenase OS=Cohaesibacter celericrescens OX=2067669 GN=C0081_22070 PE=3 SV=1
MM1 pKa = 7.44NIKK4 pKa = 10.47SIILGSAAALVAGGAAQAADD24 pKa = 4.15LPVAEE29 pKa = 4.66PVDD32 pKa = 3.96YY33 pKa = 11.46VKK35 pKa = 11.15VCDD38 pKa = 4.56AYY40 pKa = 9.79GAGYY44 pKa = 9.68FFIPGTDD51 pKa = 3.07TCLKK55 pKa = 10.35IGGKK59 pKa = 8.6VLFGAEE65 pKa = 3.98SAGFNSDD72 pKa = 3.01VARR75 pKa = 11.84SDD77 pKa = 3.45NLVNFYY83 pKa = 10.8TEE85 pKa = 3.99TTFKK89 pKa = 9.9FTARR93 pKa = 11.84EE94 pKa = 3.91EE95 pKa = 4.65TEE97 pKa = 4.73LGTLTAHH104 pKa = 6.61MEE106 pKa = 4.04FDD108 pKa = 3.96DD109 pKa = 4.83TGEE112 pKa = 4.7DD113 pKa = 3.76DD114 pKa = 4.74LGEE117 pKa = 4.18GTAIDD122 pKa = 3.68KK123 pKa = 10.98AYY125 pKa = 8.35ITLGGFYY132 pKa = 10.48AGLTDD137 pKa = 4.82SLLSFNAGYY146 pKa = 10.5GYY148 pKa = 10.71DD149 pKa = 3.92DD150 pKa = 4.36YY151 pKa = 12.12GVLDD155 pKa = 3.72VDD157 pKa = 5.63LNTIGYY163 pKa = 8.17KK164 pKa = 10.37AEE166 pKa = 4.0MGNGVTAAIALEE178 pKa = 4.54EE179 pKa = 4.12YY180 pKa = 9.74TGNEE184 pKa = 3.85TGAGTSMPAVVAKK197 pKa = 10.27LSIAQGWGSAEE208 pKa = 3.84AGGSVFQVRR217 pKa = 11.84YY218 pKa = 9.77QDD220 pKa = 3.31AAYY223 pKa = 8.5DD224 pKa = 3.68TDD226 pKa = 3.18YY227 pKa = 11.42GYY229 pKa = 11.61AFGGQAKK236 pKa = 9.81FNVVEE241 pKa = 4.1DD242 pKa = 4.15LKK244 pKa = 11.36FGVAGGYY251 pKa = 6.5TAGGSWLEE259 pKa = 4.06EE260 pKa = 4.0SAVTGKK266 pKa = 10.94LNTGWAASAGLEE278 pKa = 4.15YY279 pKa = 11.08AFADD283 pKa = 3.32NFNFYY288 pKa = 10.96VDD290 pKa = 3.61AGYY293 pKa = 10.71KK294 pKa = 10.22AFNDD298 pKa = 4.37RR299 pKa = 11.84SGTDD303 pKa = 3.14DD304 pKa = 3.39WEE306 pKa = 4.52GWGVSAMAEE315 pKa = 4.01YY316 pKa = 10.5FPVKK320 pKa = 10.12NLSIAATVGYY330 pKa = 9.95QKK332 pKa = 10.35IDD334 pKa = 3.39FDD336 pKa = 4.49TEE338 pKa = 3.88TTANQDD344 pKa = 3.11WDD346 pKa = 3.97DD347 pKa = 3.76VAAKK351 pKa = 10.65LEE353 pKa = 4.03IEE355 pKa = 4.26RR356 pKa = 11.84TFF358 pKa = 3.33

Molecular weight: 37.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N5XP47|A0A2N5XP47_9RHIZ DUF547 domain-containing protein OS=Cohaesibacter celericrescens OX=2067669 GN=C0081_14920 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.43NGRR28 pKa = 11.84LVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4355

0

4355

1385776

24

1854

318.2

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.42 ± 0.04

0.956 ± 0.011

5.919 ± 0.034

5.696 ± 0.036

4.024 ± 0.026

7.885 ± 0.034

2.109 ± 0.019

6.162 ± 0.033

4.492 ± 0.029

10.172 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.834 ± 0.019

3.319 ± 0.02

4.463 ± 0.025

3.633 ± 0.023

5.476 ± 0.034

6.407 ± 0.029

5.337 ± 0.025

7.05 ± 0.029

1.244 ± 0.013

2.403 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski