Sandaracinus amylolyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8941 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6YI92|A0A0F6YI92_9DELT Uncharacterized protein OS=Sandaracinus amylolyticus OX=927083 GN=DB32_003884 PE=4 SV=1
MM1 pKa = 7.3CRR3 pKa = 11.84WHH5 pKa = 7.34LDD7 pKa = 3.32HH8 pKa = 7.36ASCADD13 pKa = 3.98DD14 pKa = 3.98VFCDD18 pKa = 3.74GAEE21 pKa = 3.9RR22 pKa = 11.84CDD24 pKa = 3.84PVDD27 pKa = 3.12GCIEE31 pKa = 3.94GRR33 pKa = 11.84RR34 pKa = 11.84EE35 pKa = 3.93SCDD38 pKa = 3.6DD39 pKa = 3.8GDD41 pKa = 3.69VCTVDD46 pKa = 3.01RR47 pKa = 11.84CVEE50 pKa = 4.13SEE52 pKa = 4.2ASCTHH57 pKa = 7.29AARR60 pKa = 11.84DD61 pKa = 3.84LDD63 pKa = 4.33DD64 pKa = 6.24DD65 pKa = 5.02GDD67 pKa = 3.66VDD69 pKa = 4.02MFCDD73 pKa = 4.97GGNDD77 pKa = 4.5CDD79 pKa = 5.2DD80 pKa = 4.82ADD82 pKa = 4.08PTVSSGTDD90 pKa = 3.22EE91 pKa = 4.32RR92 pKa = 11.84CGNRR96 pKa = 11.84RR97 pKa = 11.84DD98 pKa = 4.05DD99 pKa = 4.8DD100 pKa = 4.36CDD102 pKa = 4.53GDD104 pKa = 3.86VDD106 pKa = 4.32EE107 pKa = 5.72DD108 pKa = 3.91ACATAPHH115 pKa = 6.78DD116 pKa = 3.99TCDD119 pKa = 4.21DD120 pKa = 4.32PLDD123 pKa = 3.85VSAGGSFVIEE133 pKa = 3.92ARR135 pKa = 11.84EE136 pKa = 3.89LRR138 pKa = 11.84GDD140 pKa = 3.69YY141 pKa = 10.22LGCGILEE148 pKa = 4.34CRR150 pKa = 11.84DD151 pKa = 3.4FVARR155 pKa = 11.84FTIDD159 pKa = 2.96EE160 pKa = 4.4AQDD163 pKa = 3.58VEE165 pKa = 5.65IIAADD170 pKa = 4.28PGDD173 pKa = 3.5DD174 pKa = 3.21WAYY177 pKa = 10.06TEE179 pKa = 3.95VALRR183 pKa = 11.84RR184 pKa = 11.84GCDD187 pKa = 3.38DD188 pKa = 3.41ATTEE192 pKa = 4.15IDD194 pKa = 4.27DD195 pKa = 3.89VTGFPATLRR204 pKa = 11.84YY205 pKa = 9.12RR206 pKa = 11.84ALEE209 pKa = 4.21PGTYY213 pKa = 9.4FVLAGAEE220 pKa = 4.17RR221 pKa = 11.84NFGSGATDD229 pKa = 3.31QLTLDD234 pKa = 3.82VTFSPDD240 pKa = 3.05TTPPTNEE247 pKa = 3.74TCASALDD254 pKa = 3.9VGAGGTFTADD264 pKa = 4.45FIDD267 pKa = 3.81TRR269 pKa = 11.84DD270 pKa = 4.1DD271 pKa = 3.58LALEE275 pKa = 4.64CGEE278 pKa = 4.9DD279 pKa = 3.47DD280 pKa = 3.91WPEE283 pKa = 3.52LVYY286 pKa = 10.69AITTSARR293 pKa = 11.84ADD295 pKa = 3.46LRR297 pKa = 11.84VTLDD301 pKa = 3.01GFARR305 pKa = 11.84LGLSVRR311 pKa = 11.84SACGDD316 pKa = 3.24ATSALGCVVLEE327 pKa = 3.99PHH329 pKa = 6.85EE330 pKa = 4.45DD331 pKa = 3.42RR332 pKa = 11.84VRR334 pKa = 11.84VFPDD338 pKa = 3.57VPAGTHH344 pKa = 5.16YY345 pKa = 10.44FVLEE349 pKa = 3.94LRR351 pKa = 11.84SIPEE355 pKa = 4.7AIAQITIEE363 pKa = 4.73ALPAAPP369 pKa = 4.86

Molecular weight: 39.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6W5Z7|A0A0F6W5Z7_9DELT Histidine kinase OS=Sandaracinus amylolyticus OX=927083 GN=DB32_005441 PE=4 SV=1
MM1 pKa = 7.64RR2 pKa = 11.84SARR5 pKa = 11.84GSARR9 pKa = 11.84RR10 pKa = 11.84PPRR13 pKa = 11.84GRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84ASTSTSPSAWRR28 pKa = 11.84AVPARR33 pKa = 11.84PRR35 pKa = 11.84AEE37 pKa = 3.83QRR39 pKa = 11.84PSVPTGRR46 pKa = 11.84HH47 pKa = 3.97AAIARR52 pKa = 11.84AAQARR57 pKa = 11.84RR58 pKa = 11.84RR59 pKa = 11.84GPARR63 pKa = 11.84PIAGRR68 pKa = 11.84ARR70 pKa = 11.84AATAPVALRR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 11.84APPVRR86 pKa = 11.84PTARR90 pKa = 11.84PAPTASAPPASRR102 pKa = 11.84SRR104 pKa = 11.84RR105 pKa = 11.84APRR108 pKa = 11.84TAQSAEE114 pKa = 3.98TARR117 pKa = 11.84ARR119 pKa = 11.84PAPSRR124 pKa = 11.84PRR126 pKa = 11.84AARR129 pKa = 11.84RR130 pKa = 11.84TALRR134 pKa = 11.84AVKK137 pKa = 9.78PRR139 pKa = 11.84ARR141 pKa = 11.84AARR144 pKa = 11.84RR145 pKa = 11.84ASSARR150 pKa = 11.84STPCARR156 pKa = 11.84RR157 pKa = 11.84RR158 pKa = 11.84GSTARR163 pKa = 11.84RR164 pKa = 11.84RR165 pKa = 11.84PAARR169 pKa = 11.84RR170 pKa = 11.84SS171 pKa = 3.39

Molecular weight: 18.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8941

0

8941

3139928

37

3731

351.2

37.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.858 ± 0.046

1.331 ± 0.03

6.482 ± 0.029

6.542 ± 0.023

2.827 ± 0.015

8.793 ± 0.038

2.191 ± 0.012

3.889 ± 0.014

1.539 ± 0.022

9.604 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.842 ± 0.012

1.414 ± 0.014

5.796 ± 0.024

2.333 ± 0.015

9.455 ± 0.038

5.36 ± 0.02

5.297 ± 0.024

8.361 ± 0.025

1.369 ± 0.011

1.718 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski