Lynx canadensis faeces associated genomovirus CL1 46

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus lepa2

Average proteome isoelectric point is 7.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CJ18|A0A2Z5CJ18_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL1 46 OX=2219124 PE=4 SV=1
MM1 pKa = 7.73PFVCNARR8 pKa = 11.84YY9 pKa = 8.99FLVTYY14 pKa = 9.3SHH16 pKa = 7.29VEE18 pKa = 3.84EE19 pKa = 5.21LDD21 pKa = 3.37PFALVEE27 pKa = 4.18FFGNLGAEE35 pKa = 4.51CIVGLEE41 pKa = 4.35PYY43 pKa = 10.0NATFGIHH50 pKa = 5.5FHH52 pKa = 6.15VFTDD56 pKa = 3.97FGRR59 pKa = 11.84KK60 pKa = 8.01FRR62 pKa = 11.84SRR64 pKa = 11.84RR65 pKa = 11.84TDD67 pKa = 2.75IFDD70 pKa = 3.55VNGFHH75 pKa = 7.44PNISPSRR82 pKa = 11.84GTPEE86 pKa = 3.98AGYY89 pKa = 10.67DD90 pKa = 3.63YY91 pKa = 10.72AIKK94 pKa = 10.92NGDD97 pKa = 3.51VVAGGLARR105 pKa = 11.84PSGVGNSGRR114 pKa = 11.84AAKK117 pKa = 8.7WHH119 pKa = 5.93QIVDD123 pKa = 3.26AEE125 pKa = 4.35TRR127 pKa = 11.84DD128 pKa = 3.72EE129 pKa = 5.46FFDD132 pKa = 3.82LCEE135 pKa = 4.1EE136 pKa = 4.75LDD138 pKa = 3.9PEE140 pKa = 4.33RR141 pKa = 11.84LVCSFSQIQKK151 pKa = 8.17YY152 pKa = 10.48ADD154 pKa = 2.77WRR156 pKa = 11.84FAEE159 pKa = 4.19NPEE162 pKa = 4.71PYY164 pKa = 10.23ASPDD168 pKa = 3.39GVFDD172 pKa = 4.25LANYY176 pKa = 9.84GDD178 pKa = 4.11LGEE181 pKa = 4.52SKK183 pKa = 10.79SLILWGPSRR192 pKa = 11.84MGKK195 pKa = 6.86TVWARR200 pKa = 11.84SLGDD204 pKa = 3.33HH205 pKa = 7.09LYY207 pKa = 10.87FGGIFSARR215 pKa = 11.84DD216 pKa = 3.12IGRR219 pKa = 11.84GGIKK223 pKa = 10.28YY224 pKa = 10.52AVFDD228 pKa = 5.44DD229 pKa = 3.44IAGGIKK235 pKa = 10.03FFPRR239 pKa = 11.84FKK241 pKa = 10.79DD242 pKa = 3.12WLGCQMEE249 pKa = 4.36FMVKK253 pKa = 9.32EE254 pKa = 4.5MYY256 pKa = 10.19RR257 pKa = 11.84DD258 pKa = 3.27PHH260 pKa = 6.35LFKK263 pKa = 10.36WGRR266 pKa = 11.84PAIWIANTDD275 pKa = 3.42PRR277 pKa = 11.84HH278 pKa = 6.13DD279 pKa = 3.82MSHH282 pKa = 6.98EE283 pKa = 4.0DD284 pKa = 3.94VTWLEE289 pKa = 4.04ANCIFVEE296 pKa = 3.75IDD298 pKa = 3.19SAIFHH303 pKa = 7.06ANTEE307 pKa = 4.17

Molecular weight: 34.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CJ18|A0A2Z5CJ18_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL1 46 OX=2219124 PE=4 SV=1
MM1 pKa = 8.11AYY3 pKa = 10.07RR4 pKa = 11.84GRR6 pKa = 11.84GPVRR10 pKa = 11.84RR11 pKa = 11.84NFRR14 pKa = 11.84AAAKK18 pKa = 9.63KK19 pKa = 10.16RR20 pKa = 11.84YY21 pKa = 9.46AGRR24 pKa = 11.84SKK26 pKa = 10.43FRR28 pKa = 11.84RR29 pKa = 11.84SYY31 pKa = 9.45GKK33 pKa = 9.93KK34 pKa = 9.04RR35 pKa = 11.84IYY37 pKa = 10.15RR38 pKa = 11.84KK39 pKa = 9.62RR40 pKa = 11.84AVPTKK45 pKa = 10.33RR46 pKa = 11.84ILNLTSRR53 pKa = 11.84KK54 pKa = 9.72KK55 pKa = 9.8QDD57 pKa = 2.99NMLSFSTTSASGANQSPGVGGLYY80 pKa = 10.64VNGSAASAMSVFCPTARR97 pKa = 11.84SLVSAGTTNLTVDD110 pKa = 3.2VSDD113 pKa = 4.25RR114 pKa = 11.84TSSTCFMRR122 pKa = 11.84GYY124 pKa = 10.33RR125 pKa = 11.84EE126 pKa = 3.76NLRR129 pKa = 11.84IQTSSPLPWLWRR141 pKa = 11.84RR142 pKa = 11.84IVFTSKK148 pKa = 10.45GGTPFGSQLASDD160 pKa = 3.52QSQYY164 pKa = 11.14VKK166 pKa = 10.54YY167 pKa = 10.56APYY170 pKa = 10.73SDD172 pKa = 3.65TTIGMARR179 pKa = 11.84LWFNLSNNNTPNTLASIQSVLFRR202 pKa = 11.84GTINQDD208 pKa = 2.63WNDD211 pKa = 3.62VITAKK216 pKa = 10.43VDD218 pKa = 3.43TSRR221 pKa = 11.84VTVMSDD227 pKa = 2.17KK228 pKa = 11.11TMTIRR233 pKa = 11.84TGNANGHH240 pKa = 4.96FSEE243 pKa = 4.55RR244 pKa = 11.84KK245 pKa = 8.83LWYY248 pKa = 9.57PMNKK252 pKa = 9.98NIVYY256 pKa = 10.6DD257 pKa = 4.13DD258 pKa = 4.79DD259 pKa = 4.37EE260 pKa = 6.55SGAAMTTAYY269 pKa = 10.58SSTEE273 pKa = 3.9AKK275 pKa = 10.29PGMGDD280 pKa = 3.2MYY282 pKa = 11.28VADD285 pKa = 4.51FLVPGIGGTASDD297 pKa = 5.04IISLNCTATLYY308 pKa = 9.4WHH310 pKa = 7.01EE311 pKa = 4.29KK312 pKa = 9.3

Molecular weight: 34.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

619

307

312

309.5

34.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.078 ± 0.18

1.454 ± 0.347

6.3 ± 1.053

4.039 ± 1.719

6.139 ± 1.844

8.562 ± 0.614

1.939 ± 0.916

5.008 ± 0.594

4.523 ± 0.653

5.816 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.746 ± 0.55

5.008 ± 0.763

4.523 ± 0.478

1.939 ± 0.441

7.27 ± 0.75

8.078 ± 1.99

6.462 ± 2.225

5.816 ± 0.033

2.262 ± 0.239

4.039 ± 0.316
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski