Caretta caretta papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyozetapapillomavirus; Dyozetapapillomavirus 1

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B6RUQ0|B6RUQ0_9PAPI E1 replication protein OS=Caretta caretta papillomavirus 1 OX=485241 GN=E1 PE=4 SV=1
MM1 pKa = 7.42HH2 pKa = 7.45NKK4 pKa = 9.04GQPIKK9 pKa = 10.15GYY11 pKa = 9.24SGKK14 pKa = 10.64YY15 pKa = 8.33MCACCRR21 pKa = 11.84KK22 pKa = 9.73DD23 pKa = 3.42VSFAQQEE30 pKa = 4.12ICIMLSEE37 pKa = 4.06QLGMLVCMNCEE48 pKa = 3.76VVVPSNQIQDD58 pKa = 3.94ALGTADD64 pKa = 3.83LAEE67 pKa = 4.33VTVSCGIGLVDD78 pKa = 4.69EE79 pKa = 5.33GSDD82 pKa = 3.25LASYY86 pKa = 11.01SEE88 pKa = 5.2LEE90 pKa = 4.1TDD92 pKa = 3.04TDD94 pKa = 3.74SDD96 pKa = 4.2NEE98 pKa = 4.29GEE100 pKa = 4.33AFLAGTDD107 pKa = 3.78SEE109 pKa = 4.8AVV111 pKa = 3.23

Molecular weight: 11.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B6RUQ2|B6RUQ2_9PAPI Putative E4 protein OS=Caretta caretta papillomavirus 1 OX=485241 GN=E4 PE=4 SV=1
MM1 pKa = 8.04DD2 pKa = 5.56ANTRR6 pKa = 11.84LMEE9 pKa = 4.28MQDD12 pKa = 3.02KK13 pKa = 10.73QMTIIEE19 pKa = 4.88KK20 pKa = 10.26DD21 pKa = 3.66DD22 pKa = 3.54QSLDD26 pKa = 4.36DD27 pKa = 3.43ILEE30 pKa = 4.12YY31 pKa = 11.13YY32 pKa = 10.42FAVKK36 pKa = 10.43DD37 pKa = 3.86EE38 pKa = 4.0YY39 pKa = 11.33LILAAARR46 pKa = 11.84KK47 pKa = 9.93AGVAHH52 pKa = 7.22IGLQRR57 pKa = 11.84VPSLQVSEE65 pKa = 4.36SKK67 pKa = 10.81YY68 pKa = 10.13RR69 pKa = 11.84EE70 pKa = 4.29AVTMIIIVQSLQNSQFKK87 pKa = 10.33NVNFTLRR94 pKa = 11.84DD95 pKa = 3.47LQYY98 pKa = 10.69QLVMQAPAFTIKK110 pKa = 10.36KK111 pKa = 9.3GPKK114 pKa = 7.78TVYY117 pKa = 8.84VTYY120 pKa = 10.58SGPDD124 pKa = 3.28KK125 pKa = 10.8LTVTHH130 pKa = 6.53TKK132 pKa = 9.5WKK134 pKa = 10.21DD135 pKa = 2.66IYY137 pKa = 9.5YY138 pKa = 10.26QRR140 pKa = 11.84DD141 pKa = 3.65EE142 pKa = 3.91QWRR145 pKa = 11.84SSKK148 pKa = 10.61DD149 pKa = 3.34LQHH152 pKa = 6.1THH154 pKa = 6.85DD155 pKa = 4.81PNWFRR160 pKa = 11.84AHH162 pKa = 6.56TLTDD166 pKa = 3.7SKK168 pKa = 11.63GLFYY172 pKa = 11.11VDD174 pKa = 3.51IYY176 pKa = 11.41GDD178 pKa = 2.95VDD180 pKa = 4.16YY181 pKa = 11.46YY182 pKa = 11.86VLFNSGEE189 pKa = 4.08PQNATRR195 pKa = 11.84KK196 pKa = 8.28GQWEE200 pKa = 4.44ISTSPPDD207 pKa = 3.45ARR209 pKa = 11.84TSTDD213 pKa = 3.0TPSRR217 pKa = 11.84KK218 pKa = 7.58TPEE221 pKa = 3.63RR222 pKa = 11.84HH223 pKa = 5.37IVAITPPIRR232 pKa = 11.84NPRR235 pKa = 11.84NPAYY239 pKa = 9.83QSKK242 pKa = 8.26PTHH245 pKa = 5.78PTPTKK250 pKa = 8.27PTHH253 pKa = 5.98TSTVTTRR260 pKa = 11.84RR261 pKa = 11.84GNGRR265 pKa = 11.84GRR267 pKa = 11.84GLGGRR272 pKa = 11.84GGGGGGAGGSTTRR285 pKa = 11.84RR286 pKa = 11.84PFAEE290 pKa = 4.03KK291 pKa = 10.0QSPVSAEE298 pKa = 3.79EE299 pKa = 3.79VGRR302 pKa = 11.84TRR304 pKa = 11.84EE305 pKa = 4.23TVQGTGTRR313 pKa = 11.84LEE315 pKa = 4.22RR316 pKa = 11.84LLKK319 pKa = 9.98EE320 pKa = 4.38ARR322 pKa = 11.84DD323 pKa = 3.68PPGLVFEE330 pKa = 5.3GSTAQIKK337 pKa = 9.65HH338 pKa = 4.21IRR340 pKa = 11.84RR341 pKa = 11.84RR342 pKa = 11.84VEE344 pKa = 3.94AGSLKK349 pKa = 9.78YY350 pKa = 10.82SRR352 pKa = 11.84VTSTWHH358 pKa = 6.04WISGKK363 pKa = 10.21KK364 pKa = 8.52VLKK367 pKa = 7.84PSKK370 pKa = 10.13MIVVFNNEE378 pKa = 3.96KK379 pKa = 10.28EE380 pKa = 3.98RR381 pKa = 11.84STFLNLFRR389 pKa = 11.84VEE391 pKa = 4.0GDD393 pKa = 3.59GITVRR398 pKa = 11.84LCSFNGLL405 pKa = 3.61

Molecular weight: 45.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2254

85

561

322.0

35.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.61 ± 0.597

2.263 ± 0.713

6.034 ± 0.44

5.457 ± 0.459

4.525 ± 0.526

6.744 ± 0.664

2.085 ± 0.252

4.392 ± 0.414

5.324 ± 0.681

7.941 ± 0.682

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.307 ± 0.255

3.86 ± 0.477

7.72 ± 1.286

3.904 ± 0.488

5.723 ± 0.574

7.72 ± 0.637

6.832 ± 0.749

6.3 ± 0.709

1.287 ± 0.244

2.972 ± 0.292
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski