Cordyline virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Velarivirus

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7CT66|E7CT66_9CLOS p6 OS=Cordyline virus 1 OX=937809 PE=4 SV=1
MM1 pKa = 7.55PTFCRR6 pKa = 11.84AGVDD10 pKa = 4.04FGTTFSTISAFVDD23 pKa = 4.48EE24 pKa = 4.81VATPLFLEE32 pKa = 5.23GSPFIPTVITFFDD45 pKa = 3.56NKK47 pKa = 10.05VVIGEE52 pKa = 4.08LAKK55 pKa = 10.27TISEE59 pKa = 4.35VVKK62 pKa = 11.17DD63 pKa = 3.56NVTYY67 pKa = 10.71FDD69 pKa = 3.73LKK71 pKa = 10.3RR72 pKa = 11.84WVGVNEE78 pKa = 4.0KK79 pKa = 10.9NFIKK83 pKa = 10.48LKK85 pKa = 10.58EE86 pKa = 4.04KK87 pKa = 10.42LQPSYY92 pKa = 10.83EE93 pKa = 4.25CKK95 pKa = 10.43LEE97 pKa = 4.36KK98 pKa = 10.75GEE100 pKa = 4.72CYY102 pKa = 9.54MGGIGVRR109 pKa = 11.84TVFRR113 pKa = 11.84SVGFLIATYY122 pKa = 10.9LDD124 pKa = 3.78VLTKK128 pKa = 10.71LFEE131 pKa = 4.16EE132 pKa = 5.09KK133 pKa = 10.77YY134 pKa = 10.32DD135 pKa = 4.01VKK137 pKa = 10.19ITNLNVSVPADD148 pKa = 4.42FYY150 pKa = 10.3TFQRR154 pKa = 11.84SYY156 pKa = 10.32MRR158 pKa = 11.84NAVNNLGIKK167 pKa = 8.8VDD169 pKa = 3.6RR170 pKa = 11.84MINEE174 pKa = 4.14PSAAALHH181 pKa = 6.58SILSNPEE188 pKa = 3.27FTDD191 pKa = 4.15FVIFDD196 pKa = 4.08FGGGTFDD203 pKa = 3.81VSYY206 pKa = 10.39IKK208 pKa = 10.71KK209 pKa = 9.07KK210 pKa = 10.75GKK212 pKa = 10.1IIMICDD218 pKa = 3.59TQGDD222 pKa = 4.46LFLGGRR228 pKa = 11.84DD229 pKa = 3.02IDD231 pKa = 4.91KK232 pKa = 10.93SIQHH236 pKa = 5.75YY237 pKa = 10.07FFGKK241 pKa = 10.05YY242 pKa = 9.99SIEE245 pKa = 3.6IHH247 pKa = 6.33PFSLSYY253 pKa = 10.0MKK255 pKa = 10.68EE256 pKa = 3.91GVSTGKK262 pKa = 9.69SQSFNVLSSNKK273 pKa = 9.66EE274 pKa = 3.69INHH277 pKa = 5.44VNFSKK282 pKa = 11.22DD283 pKa = 3.37EE284 pKa = 4.32LNSIVSPFAKK294 pKa = 9.96RR295 pKa = 11.84SCEE298 pKa = 3.62ILKK301 pKa = 10.74AVIDD305 pKa = 4.04RR306 pKa = 11.84NEE308 pKa = 3.6ITNAVICMVGGSSLLTEE325 pKa = 5.07VYY327 pKa = 10.64NQVNNVAKK335 pKa = 9.24GTNNKK340 pKa = 8.95IFRR343 pKa = 11.84DD344 pKa = 3.55EE345 pKa = 3.94NLRR348 pKa = 11.84LSVSFGCSCLHH359 pKa = 6.92FFTDD363 pKa = 5.52DD364 pKa = 3.62PDD366 pKa = 3.48FTYY369 pKa = 10.61IDD371 pKa = 4.09VNSHH375 pKa = 5.79CVFEE379 pKa = 5.0IDD381 pKa = 4.7EE382 pKa = 4.24MFKK385 pKa = 10.75PSVLIRR391 pKa = 11.84KK392 pKa = 7.67PMPIPYY398 pKa = 8.97TLRR401 pKa = 11.84QEE403 pKa = 4.21KK404 pKa = 10.27QNNNKK409 pKa = 9.5FLTAVDD415 pKa = 3.67IYY417 pKa = 10.91EE418 pKa = 5.14GDD420 pKa = 3.93SQWFLDD426 pKa = 4.12CQVLIKK432 pKa = 10.56DD433 pKa = 4.18VYY435 pKa = 9.84STDD438 pKa = 3.49AVSSLGSGYY447 pKa = 10.61YY448 pKa = 9.36RR449 pKa = 11.84VIQYY453 pKa = 11.09DD454 pKa = 3.49LDD456 pKa = 3.94GNINVWIEE464 pKa = 4.11NKK466 pKa = 10.54DD467 pKa = 3.57STNKK471 pKa = 10.05RR472 pKa = 11.84NLKK475 pKa = 10.45SLITSHH481 pKa = 6.18KK482 pKa = 8.79TIKK485 pKa = 10.62LEE487 pKa = 3.76NFEE490 pKa = 4.39RR491 pKa = 11.84VQTGSSSLYY500 pKa = 8.67CTVAEE505 pKa = 4.45LIKK508 pKa = 10.43YY509 pKa = 9.3HH510 pKa = 6.96KK511 pKa = 10.09LDD513 pKa = 3.92KK514 pKa = 10.96NIEE517 pKa = 4.53AIDD520 pKa = 3.66SNLFFKK526 pKa = 10.71IKK528 pKa = 10.37DD529 pKa = 3.66YY530 pKa = 11.5IEE532 pKa = 4.4INGGISKK539 pKa = 10.67YY540 pKa = 10.39IEE542 pKa = 3.96TLRR545 pKa = 11.84KK546 pKa = 10.14NGVQII551 pKa = 4.32

Molecular weight: 62.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7CT65|E7CT65_9CLOS HSP70h OS=Cordyline virus 1 OX=937809 PE=3 SV=1
MM1 pKa = 7.58IFLFFLFFLLFLFLLNLCTSPSNKK25 pKa = 9.6GFIVHH30 pKa = 5.68KK31 pKa = 10.08QIYY34 pKa = 8.52YY35 pKa = 10.52SPP37 pKa = 3.86

Molecular weight: 4.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

5415

37

2360

541.5

62.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.358 ± 0.413

1.773 ± 0.229

5.854 ± 0.281

5.669 ± 0.558

6.464 ± 0.431

3.767 ± 0.359

1.699 ± 0.179

7.701 ± 0.591

8.79 ± 0.398

9.03 ± 0.331

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.161 ± 0.274

7.313 ± 0.298

2.77 ± 0.363

2.77 ± 0.285

4.543 ± 0.285

7.553 ± 0.374

5.706 ± 0.586

7.018 ± 0.538

0.517 ± 0.109

4.543 ± 0.264
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski