Ancylobacter rudongensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4123 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G4QSE3|A0A1G4QSE3_9RHIZ Signal peptidase I OS=Ancylobacter rudongensis OX=177413 GN=SAMN05660859_1389 PE=3 SV=1
MM1 pKa = 7.95RR2 pKa = 11.84YY3 pKa = 9.69AVLSVAALLVAGLSPAGAQQPIEE26 pKa = 4.04VHH28 pKa = 5.87PNKK31 pKa = 9.87PAGGGLEE38 pKa = 3.91ISIPPINNPNYY49 pKa = 10.27LDD51 pKa = 4.04YY52 pKa = 11.48GPLPDD57 pKa = 5.55KK58 pKa = 10.97PGADD62 pKa = 3.19KK63 pKa = 11.31SQDD66 pKa = 3.4YY67 pKa = 9.95MEE69 pKa = 4.36QAGGNYY75 pKa = 9.26EE76 pKa = 4.1NLSGPGSDD84 pKa = 3.16VDD86 pKa = 4.07ADD88 pKa = 3.84VMPDD92 pKa = 2.89SDD94 pKa = 4.04GAYY97 pKa = 9.13EE98 pKa = 4.35SPLDD102 pKa = 3.63

Molecular weight: 10.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G4RIU1|A0A1G4RIU1_9RHIZ Ribosomal RNA small subunit methyltransferase E OS=Ancylobacter rudongensis OX=177413 GN=SAMN05660859_1690 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.43LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.38GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84TGRR28 pKa = 11.84KK29 pKa = 8.9IINLRR34 pKa = 11.84RR35 pKa = 11.84AHH37 pKa = 5.13GRR39 pKa = 11.84KK40 pKa = 9.31RR41 pKa = 11.84LSAA44 pKa = 4.01

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4123

0

4123

1337184

25

2981

324.3

34.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.791 ± 0.058

0.776 ± 0.012

5.403 ± 0.034

5.656 ± 0.03

3.685 ± 0.024

8.977 ± 0.041

1.954 ± 0.018

4.757 ± 0.029

2.755 ± 0.032

10.618 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.32 ± 0.017

2.269 ± 0.022

5.681 ± 0.037

2.801 ± 0.023

7.274 ± 0.041

4.98 ± 0.028

5.254 ± 0.03

7.658 ± 0.031

1.291 ± 0.015

2.1 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski