Ulvibacter sp. MAR_2010_11

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ulvibacter; unclassified Ulvibacter

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2733 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N0EWT1|A0A2N0EWT1_9FLAO Type I restriction and modification enzyme subunit R-like protein OS=Ulvibacter sp. MAR_2010_11 OX=1250229 GN=ATE92_2754 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 10.53NVVQILAVALISATAFSQTARR23 pKa = 11.84VNVIHH28 pKa = 6.73NSADD32 pKa = 3.24AAAEE36 pKa = 4.02QVDD39 pKa = 4.72VYY41 pKa = 11.36LDD43 pKa = 3.33AALALDD49 pKa = 3.61NFTFRR54 pKa = 11.84TEE56 pKa = 3.76SGFIDD61 pKa = 4.7FPAEE65 pKa = 3.8VEE67 pKa = 4.48VIIGVAPPNSTSSGDD82 pKa = 3.85AIASFPVTLMDD93 pKa = 3.78GEE95 pKa = 4.69TYY97 pKa = 10.38IVVADD102 pKa = 5.09GIVSPTGYY110 pKa = 10.92DD111 pKa = 3.53PIQPFSLEE119 pKa = 3.97VYY121 pKa = 10.86AMGRR125 pKa = 11.84EE126 pKa = 4.05TAAVATNTDD135 pKa = 3.5VLVHH139 pKa = 6.6HH140 pKa = 7.28GSTDD144 pKa = 3.2APTVDD149 pKa = 3.84VVEE152 pKa = 4.86TGAGAGTIVDD162 pKa = 4.23NITYY166 pKa = 10.19SEE168 pKa = 4.08FQGYY172 pKa = 10.11LEE174 pKa = 5.69LPTADD179 pKa = 3.21YY180 pKa = 10.88VLEE183 pKa = 4.19VRR185 pKa = 11.84DD186 pKa = 3.57EE187 pKa = 4.25TGTVGVAAYY196 pKa = 7.43EE197 pKa = 4.34APLATLNLDD206 pKa = 3.63GAALVVLASGFLNPANNSNGPAFGLWVSTGAPGALLEE243 pKa = 4.87LPSAALGVNDD253 pKa = 4.84FDD255 pKa = 3.6ITSFALYY262 pKa = 9.23PNPTTEE268 pKa = 3.94QLNVSVSGIEE278 pKa = 3.66LANYY282 pKa = 8.64NVSITDD288 pKa = 3.38MLGRR292 pKa = 11.84TVLSNLTVTDD302 pKa = 3.47NSVDD306 pKa = 3.44VTALHH311 pKa = 6.29GGIYY315 pKa = 9.61QLSIMDD321 pKa = 4.06GTTTIATKK329 pKa = 10.72KK330 pKa = 10.32FIKK333 pKa = 10.1QQ334 pKa = 3.07

Molecular weight: 34.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N0ERL1|A0A2N0ERL1_9FLAO LuxR family two component transcriptional regulator OS=Ulvibacter sp. MAR_2010_11 OX=1250229 GN=ATE92_0867 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.21KK16 pKa = 10.3RR17 pKa = 11.84KK18 pKa = 9.62KK19 pKa = 9.04RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.5KK27 pKa = 10.78KK28 pKa = 9.37KK29 pKa = 10.83

Molecular weight: 3.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2733

0

2733

915841

29

4170

335.1

37.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.936 ± 0.044

0.766 ± 0.018

5.521 ± 0.046

6.674 ± 0.052

5.175 ± 0.033

6.74 ± 0.057

1.751 ± 0.022

7.655 ± 0.04

7.097 ± 0.079

9.245 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.023

5.747 ± 0.04

3.557 ± 0.035

3.336 ± 0.026

3.505 ± 0.039

6.445 ± 0.03

6.133 ± 0.066

6.532 ± 0.044

1.019 ± 0.017

3.945 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski