Xanthomonas albilineans (strain GPE PC73 / CFBP 7063)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas albilineans

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D2UC54|D2UC54_XANAP Putative carbohydrate kinase protein OS=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) OX=380358 GN=XALc_0804 PE=4 SV=1
MM1 pKa = 7.74SDD3 pKa = 2.95ATATIYY9 pKa = 9.94RR10 pKa = 11.84AWMCVVCGFIYY21 pKa = 10.91NEE23 pKa = 3.89ADD25 pKa = 3.36GLPEE29 pKa = 4.02EE30 pKa = 5.64GIAPGTRR37 pKa = 11.84WEE39 pKa = 4.7DD40 pKa = 3.78VPDD43 pKa = 3.14TWTCPDD49 pKa = 3.91CGVTKK54 pKa = 10.7DD55 pKa = 3.8DD56 pKa = 4.41FEE58 pKa = 4.58MVTIEE63 pKa = 3.97

Molecular weight: 7.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D6CK49|D6CK49_XANAP Probable conjugal transfer protein OS=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) OX=380358 GN=virB8 PE=4 SV=1
MM1 pKa = 7.22LRR3 pKa = 11.84AVRR6 pKa = 11.84YY7 pKa = 7.03TPWQRR12 pKa = 11.84EE13 pKa = 3.96SSEE16 pKa = 3.85NTNARR21 pKa = 11.84LHH23 pKa = 5.56QFMPKK28 pKa = 10.53GPDD31 pKa = 3.07LSKK34 pKa = 11.15ASQEE38 pKa = 4.12YY39 pKa = 10.28LNNVADD45 pKa = 4.24LMNARR50 pKa = 11.84SRR52 pKa = 11.84RR53 pKa = 11.84TLGWKK58 pKa = 8.26TPNQSGAGKK67 pKa = 9.96RR68 pKa = 11.84EE69 pKa = 3.34RR70 pKa = 11.84SIQRR74 pKa = 11.84RR75 pKa = 11.84CCACKK80 pKa = 10.34LRR82 pKa = 11.84MPLLRR87 pKa = 11.84MNTFEE92 pKa = 4.84LAIFYY97 pKa = 8.15GTEE100 pKa = 3.6MSRR103 pKa = 11.84ICLKK107 pKa = 10.56IGSS110 pKa = 3.94

Molecular weight: 12.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3190

0

3190

1118321

24

10708

350.6

38.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.699 ± 0.052

0.93 ± 0.014

5.689 ± 0.03

4.862 ± 0.051

3.202 ± 0.026

8.041 ± 0.054

2.544 ± 0.028

4.291 ± 0.031

2.759 ± 0.045

11.11 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.191 ± 0.025

2.738 ± 0.034

5.264 ± 0.038

4.472 ± 0.035

7.301 ± 0.05

5.543 ± 0.05

5.165 ± 0.044

7.202 ± 0.035

1.489 ± 0.019

2.508 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski