Herbiconiux ginsengi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia;

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4507 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3TJS6|A0A1H3TJS6_9MICO ATP-binding cassette subfamily B OS=Herbiconiux ginsengi OX=381665 GN=SAMN05216554_4275 PE=4 SV=1
MM1 pKa = 7.62LANKK5 pKa = 10.0SFTLIGSGVSVMLIAALTGCSASGGVPGASKK36 pKa = 10.77GGEE39 pKa = 3.9LRR41 pKa = 11.84LALLGDD47 pKa = 4.14ISTPDD52 pKa = 3.95PDD54 pKa = 3.53TAYY57 pKa = 10.64DD58 pKa = 3.79GSEE61 pKa = 3.96LNIVNSAYY69 pKa = 10.05EE70 pKa = 3.98GLLGYY75 pKa = 10.45VPGKK79 pKa = 9.5QEE81 pKa = 3.93PEE83 pKa = 4.06LTGVLATEE91 pKa = 4.85WTASANNTVFTFRR104 pKa = 11.84LRR106 pKa = 11.84EE107 pKa = 3.85GVTFHH112 pKa = 7.72DD113 pKa = 4.45GTPFTADD120 pKa = 4.25AIQSSFDD127 pKa = 3.13RR128 pKa = 11.84RR129 pKa = 11.84NAIGEE134 pKa = 4.41GPSYY138 pKa = 8.43MTAGVASVVAADD150 pKa = 4.66DD151 pKa = 4.13FNVTITLRR159 pKa = 11.84QPNSSFLDD167 pKa = 3.65LLASPFGPKK176 pKa = 9.23MISPTALKK184 pKa = 9.39EE185 pKa = 4.07HH186 pKa = 6.6PVVNGSEE193 pKa = 3.96DD194 pKa = 3.21WFDD197 pKa = 4.53SNDD200 pKa = 3.68AGTGPYY206 pKa = 9.57TYY208 pKa = 10.94GAFAPGTSYY217 pKa = 11.2QLNAYY222 pKa = 8.74GGYY225 pKa = 9.23WGDD228 pKa = 3.43APGYY232 pKa = 9.65DD233 pKa = 2.96AVSFDD238 pKa = 3.83VFSNSATIQLEE249 pKa = 4.22LQDD252 pKa = 4.43GGVDD256 pKa = 3.77GLIGYY261 pKa = 10.14ADD263 pKa = 4.19ASTFDD268 pKa = 3.14QLKK271 pKa = 10.51RR272 pKa = 11.84SDD274 pKa = 3.96RR275 pKa = 11.84LSAYY279 pKa = 9.32AFPSMEE285 pKa = 4.26TPTMFVNPQSPDD297 pKa = 3.2LADD300 pKa = 4.26PDD302 pKa = 3.7VRR304 pKa = 11.84RR305 pKa = 11.84SFISSIDD312 pKa = 3.62FNALADD318 pKa = 3.67TALADD323 pKa = 3.81TATPTDD329 pKa = 3.64GVFPTTLLPANLNTQAITYY348 pKa = 8.88NPNALAQLAKK358 pKa = 10.36GQLAGSTITIAYY370 pKa = 8.0AQAGPAAQALSDD382 pKa = 3.79NLAAVLNGAGIAAEE396 pKa = 4.16SVGYY400 pKa = 8.33DD401 pKa = 3.01TGSYY405 pKa = 9.62YY406 pKa = 11.06AALTEE411 pKa = 4.46GAAAPDD417 pKa = 3.2ITFYY421 pKa = 11.31SGFPDD426 pKa = 3.73TASPEE431 pKa = 3.25AWAFVFYY438 pKa = 10.37TPAGGLDD445 pKa = 3.73LFGADD450 pKa = 3.53VPGVADD456 pKa = 6.23LIDD459 pKa = 3.47QATVTGDD466 pKa = 3.22DD467 pKa = 3.56ALYY470 pKa = 10.88GDD472 pKa = 3.85VAQRR476 pKa = 11.84VSEE479 pKa = 4.13SGYY482 pKa = 7.69WRR484 pKa = 11.84SVATSLGLAVFQKK497 pKa = 10.83GISGVDD503 pKa = 2.94RR504 pKa = 11.84AYY506 pKa = 11.24SPVITGILDD515 pKa = 3.23IALIEE520 pKa = 4.34PPAA523 pKa = 5.46

Molecular weight: 54.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H3TLW1|A0A1H3TLW1_9MICO AraC-type DNA-binding protein OS=Herbiconiux ginsengi OX=381665 GN=SAMN05216554_4304 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 10.23VRR4 pKa = 11.84NSLGSMKK11 pKa = 10.21KK12 pKa = 7.81MQGSQVVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84TFVINHH30 pKa = 6.31ANPRR34 pKa = 11.84FKK36 pKa = 10.81ARR38 pKa = 11.84QGG40 pKa = 3.28

Molecular weight: 4.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4507

0

4507

1471252

25

2301

326.4

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.319 ± 0.05

0.479 ± 0.009

6.157 ± 0.029

5.451 ± 0.037

3.248 ± 0.022

9.043 ± 0.038

1.967 ± 0.02

4.625 ± 0.028

1.925 ± 0.023

9.999 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.657 ± 0.013

2.138 ± 0.022

5.531 ± 0.028

2.721 ± 0.021

6.872 ± 0.044

6.181 ± 0.026

6.275 ± 0.04

8.906 ± 0.038

1.46 ± 0.016

2.046 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski