Lysobacter lycopersici

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2491 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A516V8K4|A0A516V8K4_9GAMM Uncharacterized protein OS=Lysobacter lycopersici OX=1324796 GN=FNZ56_12545 PE=4 SV=1
MM1 pKa = 6.76KK2 pKa = 10.34QCMLWGDD9 pKa = 4.43LSSDD13 pKa = 3.61RR14 pKa = 11.84ASEE17 pKa = 4.13QYY19 pKa = 10.32PEE21 pKa = 4.59EE22 pKa = 4.36PVCTGCIKK30 pKa = 10.88DD31 pKa = 3.59EE32 pKa = 4.15EE33 pKa = 4.4ARR35 pKa = 11.84GEE37 pKa = 3.95DD38 pKa = 3.49SRR40 pKa = 11.84IVSVGDD46 pKa = 3.5LVTDD50 pKa = 4.35PEE52 pKa = 4.63AVCALCDD59 pKa = 4.98CGFDD63 pKa = 4.29DD64 pKa = 5.5

Molecular weight: 6.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A516V4X4|A0A516V4X4_9GAMM DUF4097 domain-containing protein OS=Lysobacter lycopersici OX=1324796 GN=FNZ56_06645 PE=4 SV=1
MM1 pKa = 7.5AMKK4 pKa = 10.35KK5 pKa = 9.75AAKK8 pKa = 10.03KK9 pKa = 8.63PAKK12 pKa = 9.75KK13 pKa = 9.82AAKK16 pKa = 9.96KK17 pKa = 10.11KK18 pKa = 8.72VAKK21 pKa = 10.34KK22 pKa = 8.51KK23 pKa = 7.08TARR26 pKa = 11.84KK27 pKa = 9.01AVKK30 pKa = 9.91KK31 pKa = 9.95AAKK34 pKa = 8.47KK35 pKa = 7.0TAKK38 pKa = 10.3KK39 pKa = 10.1AVKK42 pKa = 9.71KK43 pKa = 9.74AAKK46 pKa = 9.74RR47 pKa = 11.84KK48 pKa = 7.59PAKK51 pKa = 9.97KK52 pKa = 9.65AAKK55 pKa = 9.68KK56 pKa = 9.13VAKK59 pKa = 9.61KK60 pKa = 10.34RR61 pKa = 11.84KK62 pKa = 7.3PAKK65 pKa = 9.9KK66 pKa = 9.54AAKK69 pKa = 9.42KK70 pKa = 9.14AAKK73 pKa = 9.79RR74 pKa = 11.84KK75 pKa = 7.69PAKK78 pKa = 9.97KK79 pKa = 9.61AAKK82 pKa = 9.42KK83 pKa = 9.14AAKK86 pKa = 9.79RR87 pKa = 11.84KK88 pKa = 7.69PAKK91 pKa = 9.97KK92 pKa = 9.61AAKK95 pKa = 9.42KK96 pKa = 9.14AAKK99 pKa = 9.79RR100 pKa = 11.84KK101 pKa = 7.69PAKK104 pKa = 9.96KK105 pKa = 9.68AAKK108 pKa = 9.49KK109 pKa = 9.53KK110 pKa = 10.16AKK112 pKa = 10.22KK113 pKa = 9.63SVKK116 pKa = 9.98KK117 pKa = 10.03SGPVAMPSVPAPMII131 pKa = 3.99

Molecular weight: 13.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2491

0

2491

793208

33

2407

318.4

34.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.33 ± 0.067

0.888 ± 0.013

6.25 ± 0.043

5.39 ± 0.053

3.533 ± 0.033

8.605 ± 0.045

2.23 ± 0.024

4.16 ± 0.034

3.15 ± 0.043

10.503 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.025

2.562 ± 0.033

5.378 ± 0.036

3.417 ± 0.03

7.614 ± 0.066

5.073 ± 0.037

4.647 ± 0.043

7.245 ± 0.041

1.536 ± 0.025

2.272 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski