Gordonia phage YorkOnyx

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vividuovirus; unclassified Vividuovirus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 84 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7G8LMC3|A0A7G8LMC3_9CAUD Uncharacterized protein OS=Gordonia phage YorkOnyx OX=2762402 GN=74 PE=4 SV=1
MM1 pKa = 7.6ASDD4 pKa = 5.73DD5 pKa = 3.67IRR7 pKa = 11.84NYY9 pKa = 11.26DD10 pKa = 3.6PDD12 pKa = 3.03TGMRR16 pKa = 11.84YY17 pKa = 8.74RR18 pKa = 11.84WEE20 pKa = 4.16MPDD23 pKa = 3.25SEE25 pKa = 4.56RR26 pKa = 11.84GFVVEE31 pKa = 5.36IDD33 pKa = 3.84NDD35 pKa = 3.75DD36 pKa = 3.92TGPILCGCLCGPGYY50 pKa = 10.45SRR52 pKa = 11.84PAPFLYY58 pKa = 9.95PDD60 pKa = 3.38EE61 pKa = 4.68ARR63 pKa = 11.84WLAEE67 pKa = 4.07HH68 pKa = 6.23MPEE71 pKa = 3.54MLAAIEE77 pKa = 4.56AYY79 pKa = 9.48EE80 pKa = 4.05LQAGGASSS88 pKa = 3.2

Molecular weight: 9.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7G8LM68|A0A7G8LM68_9CAUD HNH endonuclease OS=Gordonia phage YorkOnyx OX=2762402 GN=19 PE=4 SV=1
MM1 pKa = 7.16GWLVFGPAFVVVRR14 pKa = 11.84IVKK17 pKa = 9.78IVEE20 pKa = 4.16DD21 pKa = 3.64ALSPKK26 pKa = 9.79RR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84EE30 pKa = 4.14LIRR33 pKa = 11.84QQTRR37 pKa = 11.84DD38 pKa = 3.48EE39 pKa = 4.16VAAAARR45 pKa = 11.84RR46 pKa = 11.84SEE48 pKa = 4.19EE49 pKa = 3.8YY50 pKa = 10.16RR51 pKa = 11.84RR52 pKa = 11.84TRR54 pKa = 11.84YY55 pKa = 10.12GLL57 pKa = 3.49

Molecular weight: 6.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

84

0

84

18370

34

1672

218.7

23.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.471 ± 0.411

0.762 ± 0.096

7.643 ± 0.441

5.471 ± 0.394

2.373 ± 0.154

8.737 ± 0.452

2.09 ± 0.152

4.377 ± 0.272

2.379 ± 0.195

7.425 ± 0.263

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.128 ± 0.111

2.597 ± 0.144

6.206 ± 0.268

3.745 ± 0.158

7.784 ± 0.454

4.878 ± 0.225

6.658 ± 0.278

7.98 ± 0.249

2.079 ± 0.131

2.216 ± 0.156
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski