Pythium nunn virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Gammapartitivirus; unclassified Gammapartitivirus

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5ZAM9|A0A2Z5ZAM9_9VIRU Putative capsid protein OS=Pythium nunn virus 1 OX=2083275 GN=CP PE=4 SV=1
MM1 pKa = 7.68NYY3 pKa = 9.83NARR6 pKa = 11.84DD7 pKa = 3.43VGEE10 pKa = 4.28AVSNGQPPRR19 pKa = 11.84RR20 pKa = 11.84AGDD23 pKa = 3.64NPNKK27 pKa = 10.42AFAQRR32 pKa = 11.84RR33 pKa = 11.84QGNRR37 pKa = 11.84PKK39 pKa = 10.83VKK41 pKa = 9.1NTPSGPKK48 pKa = 7.61TTTEE52 pKa = 3.57AFRR55 pKa = 11.84WIEE58 pKa = 3.98PLPEE62 pKa = 4.18VTPMPAVLEE71 pKa = 4.65TITEE75 pKa = 4.45SIPAGSIEE83 pKa = 5.22LNFEE87 pKa = 4.26LPSTVASPFTQSVEE101 pKa = 4.28SVLMRR106 pKa = 11.84TDD108 pKa = 3.84LPSASIYY115 pKa = 7.73QARR118 pKa = 11.84DD119 pKa = 3.06KK120 pKa = 11.56LEE122 pKa = 3.97ALSYY126 pKa = 11.02YY127 pKa = 9.79KK128 pKa = 10.4ACRR131 pKa = 11.84QLYY134 pKa = 8.14STLSDD139 pKa = 3.59PQKK142 pKa = 11.05AALQPLKK149 pKa = 10.65AIYY152 pKa = 9.49YY153 pKa = 8.49DD154 pKa = 3.63KK155 pKa = 11.42SHH157 pKa = 6.98IPNHH161 pKa = 5.51MSAALSMIGNLEE173 pKa = 4.13SKK175 pKa = 9.92MGLIEE180 pKa = 4.3VKK182 pKa = 10.14HH183 pKa = 6.19APVLFKK189 pKa = 10.55RR190 pKa = 11.84WLIAGLCIDD199 pKa = 4.9PDD201 pKa = 3.96TTYY204 pKa = 10.42TAATVAPNSLVFKK217 pKa = 10.44DD218 pKa = 4.29VYY220 pKa = 11.01SKK222 pKa = 11.7ALIDD226 pKa = 3.61EE227 pKa = 4.63KK228 pKa = 11.39ANEE231 pKa = 4.06RR232 pKa = 11.84LKK234 pKa = 10.62EE235 pKa = 3.85IHH237 pKa = 6.57NEE239 pKa = 3.82TFKK242 pKa = 11.04IKK244 pKa = 10.7VGTTDD249 pKa = 3.37IEE251 pKa = 4.48VSAPIPPPTDD261 pKa = 2.77AGYY264 pKa = 11.4NSIPDD269 pKa = 4.53DD270 pKa = 3.93YY271 pKa = 11.23PHH273 pKa = 7.16ADD275 pKa = 3.23EE276 pKa = 5.08MRR278 pKa = 11.84DD279 pKa = 3.45LVSIIQMATRR289 pKa = 11.84DD290 pKa = 4.0YY291 pKa = 11.28VRR293 pKa = 11.84SQPVPHH299 pKa = 6.79GRR301 pKa = 11.84DD302 pKa = 3.03LDD304 pKa = 3.99TALSHH309 pKa = 7.18LGLQVAPAGYY319 pKa = 9.98SDD321 pKa = 3.52QDD323 pKa = 3.31LRR325 pKa = 11.84TAFEE329 pKa = 4.5DD330 pKa = 4.74AIEE333 pKa = 4.55TYY335 pKa = 9.22LTTEE339 pKa = 4.68IIHH342 pKa = 6.01IQTVFHH348 pKa = 6.66LGEE351 pKa = 4.42PPATEE356 pKa = 4.12RR357 pKa = 11.84GFASQLVASDD367 pKa = 4.07DD368 pKa = 3.45VTARR372 pKa = 11.84FGLPLSDD379 pKa = 3.98ADD381 pKa = 3.76KK382 pKa = 11.48ALGFMFNPRR391 pKa = 11.84HH392 pKa = 5.53SFEE395 pKa = 4.18FNPRR399 pKa = 11.84FVAYY403 pKa = 9.87SRR405 pKa = 11.84RR406 pKa = 11.84AKK408 pKa = 9.56RR409 pKa = 11.84TTASQFASNDD419 pKa = 3.08LRR421 pKa = 11.84HH422 pKa = 6.6IGTDD426 pKa = 3.0

Molecular weight: 47.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5ZAM9|A0A2Z5ZAM9_9VIRU Putative capsid protein OS=Pythium nunn virus 1 OX=2083275 GN=CP PE=4 SV=1
MM1 pKa = 6.44TTKK4 pKa = 9.37KK5 pKa = 8.77TRR7 pKa = 11.84AEE9 pKa = 3.85VQEE12 pKa = 3.98FLKK15 pKa = 10.36TIAGKK20 pKa = 9.51PGLRR24 pKa = 11.84VVPDD28 pKa = 4.26PNAYY32 pKa = 9.02PYY34 pKa = 10.61NVEE37 pKa = 4.08EE38 pKa = 4.35TRR40 pKa = 11.84MNTDD44 pKa = 3.02PFVRR48 pKa = 11.84KK49 pKa = 9.74SMKK52 pKa = 8.84LWSRR56 pKa = 11.84EE57 pKa = 3.69TYY59 pKa = 8.36EE60 pKa = 3.99AQRR63 pKa = 11.84GFTKK67 pKa = 10.58RR68 pKa = 11.84ATLSNSLYY76 pKa = 9.97TLQKK80 pKa = 8.74YY81 pKa = 9.89ASPQRR86 pKa = 11.84LKK88 pKa = 11.03SQISHH93 pKa = 5.97EE94 pKa = 4.25FEE96 pKa = 4.22SCIEE100 pKa = 4.01SAIAYY105 pKa = 7.45ARR107 pKa = 11.84HH108 pKa = 5.34VFIPQDD114 pKa = 3.05KK115 pKa = 10.1LLRR118 pKa = 11.84YY119 pKa = 9.4SLAHH123 pKa = 6.02GTDD126 pKa = 3.0NMNLDD131 pKa = 3.56SAAGFSYY138 pKa = 10.75PGMKK142 pKa = 9.65KK143 pKa = 10.47AEE145 pKa = 4.33VVEE148 pKa = 4.17EE149 pKa = 4.63AYY151 pKa = 10.44DD152 pKa = 3.5VAAYY156 pKa = 8.71LQHH159 pKa = 5.05MTQRR163 pKa = 11.84GKK165 pKa = 10.35SVYY168 pKa = 10.01IPPCKK173 pKa = 9.79VALRR177 pKa = 11.84GHH179 pKa = 7.15LSSQEE184 pKa = 4.07EE185 pKa = 4.33QKK187 pKa = 10.86SRR189 pKa = 11.84PVWVYY194 pKa = 9.26PVEE197 pKa = 4.22VTILEE202 pKa = 4.51SKK204 pKa = 9.14WAIPFYY210 pKa = 10.78EE211 pKa = 4.04HH212 pKa = 7.6LEE214 pKa = 4.29RR215 pKa = 11.84NVEE218 pKa = 4.34TVHH221 pKa = 6.79FGANAMPKK229 pKa = 10.37LSQLLMGGLADD240 pKa = 3.61HH241 pKa = 6.9SEE243 pKa = 4.08AAEE246 pKa = 4.08ITLDD250 pKa = 3.13WSNFDD255 pKa = 3.58SSIPNWLINQAFDD268 pKa = 4.85IIWEE272 pKa = 4.32SFDD275 pKa = 3.26NQYY278 pKa = 11.41AYY280 pKa = 10.66HH281 pKa = 6.83EE282 pKa = 4.89GEE284 pKa = 3.76AVYY287 pKa = 10.28GGEE290 pKa = 3.93VMEE293 pKa = 4.95RR294 pKa = 11.84KK295 pKa = 9.8NINLFRR301 pKa = 11.84WIKK304 pKa = 10.37EE305 pKa = 3.61YY306 pKa = 10.75FINTKK311 pKa = 10.1IMLPSGDD318 pKa = 3.69VVRR321 pKa = 11.84KK322 pKa = 6.49THH324 pKa = 7.05GIPSGSFFTQAVGSIVNYY342 pKa = 10.35IMVKK346 pKa = 10.57ALDD349 pKa = 5.03LYY351 pKa = 10.26FSWGARR357 pKa = 11.84RR358 pKa = 11.84IRR360 pKa = 11.84ILGDD364 pKa = 3.23DD365 pKa = 3.98SSFLIPLFSEE375 pKa = 4.81KK376 pKa = 10.24KK377 pKa = 10.03CEE379 pKa = 3.98AKK381 pKa = 10.5AIQNAAWKK389 pKa = 10.49AFGVTLKK396 pKa = 10.71LPKK399 pKa = 10.21LRR401 pKa = 11.84ISTTQKK407 pKa = 8.99QRR409 pKa = 11.84KK410 pKa = 7.56FLGYY414 pKa = 10.19QITGHH419 pKa = 6.59RR420 pKa = 11.84LFRR423 pKa = 11.84DD424 pKa = 3.21DD425 pKa = 6.49DD426 pKa = 3.98EE427 pKa = 4.41FLKK430 pKa = 11.06LVLYY434 pKa = 8.8PEE436 pKa = 4.93RR437 pKa = 11.84DD438 pKa = 3.55VEE440 pKa = 4.31TLEE443 pKa = 4.15QSASRR448 pKa = 11.84VLAYY452 pKa = 11.12YY453 pKa = 9.8MLGGVNDD460 pKa = 3.78EE461 pKa = 4.85VYY463 pKa = 10.98CSFFWDD469 pKa = 3.5YY470 pKa = 11.17LGRR473 pKa = 11.84YY474 pKa = 6.48PAVIGRR480 pKa = 11.84EE481 pKa = 3.97LRR483 pKa = 11.84LTRR486 pKa = 11.84GMKK489 pKa = 10.34RR490 pKa = 11.84MFKK493 pKa = 10.02FVLRR497 pKa = 11.84QEE499 pKa = 4.21VDD501 pKa = 3.39VLRR504 pKa = 11.84VPDD507 pKa = 4.2FTKK510 pKa = 10.71LDD512 pKa = 3.84PTFVPYY518 pKa = 11.24LMTLGDD524 pKa = 4.5RR525 pKa = 11.84PFSSNN530 pKa = 3.07

Molecular weight: 61.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

956

426

530

478.0

54.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.473 ± 1.267

0.628 ± 0.108

5.544 ± 0.703

6.276 ± 0.439

4.812 ± 0.561

5.021 ± 0.383

2.301 ± 0.192

5.335 ± 0.204

5.649 ± 0.651

8.577 ± 0.407

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.51 ± 0.272

3.766 ± 0.154

6.172 ± 1.236

3.661 ± 0.096

6.172 ± 0.207

7.218 ± 0.201

6.067 ± 0.826

6.172 ± 0.527

1.255 ± 0.537

4.393 ± 0.596
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski