Fulmarus glacialis papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treiszetapapillomavirus; Treiszetapapillomavirus 1

Average proteome isoelectric point is 7.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A059TAV3|A0A059TAV3_9PAPI Uncharacterized protein OS=Fulmarus glacialis papillomavirus 1 OX=1463817 PE=4 SV=1
MM1 pKa = 7.4IADD4 pKa = 4.3GNTPQISNEE13 pKa = 4.18EE14 pKa = 4.06EE15 pKa = 4.02DD16 pKa = 3.86HH17 pKa = 5.49TTGPGDD23 pKa = 3.72NASLPMDD30 pKa = 3.55VDD32 pKa = 3.95LRR34 pKa = 11.84CYY36 pKa = 10.79EE37 pKa = 4.06EE38 pKa = 6.09LDD40 pKa = 4.85DD41 pKa = 6.23GGLDD45 pKa = 3.77PLPCVQCGTPLWYY58 pKa = 10.66NPGGGICSLCTFAGDD73 pKa = 3.72PNIVSFTCKK82 pKa = 9.57KK83 pKa = 8.84CHH85 pKa = 6.19SVVLTLDD92 pKa = 3.29ASAAVLQMCLICQCSEE108 pKa = 3.26TRR110 pKa = 11.84YY111 pKa = 10.37SVNEE115 pKa = 4.06LFDD118 pKa = 3.79CC119 pKa = 5.47

Molecular weight: 12.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A059TB07|A0A059TB07_9PAPI Replication protein E1 OS=Fulmarus glacialis papillomavirus 1 OX=1463817 PE=3 SV=1
MM1 pKa = 7.7IPPPLSQRR9 pKa = 11.84FRR11 pKa = 11.84EE12 pKa = 4.13MTVGCTASWIPRR24 pKa = 11.84PLVQGQEE31 pKa = 4.02AFPVSLFLWDD41 pKa = 3.47TRR43 pKa = 11.84AVKK46 pKa = 9.94PVTVIHH52 pKa = 6.65SRR54 pKa = 11.84MM55 pKa = 3.46

Molecular weight: 6.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

2605

50

587

217.1

24.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.72 ± 0.517

2.61 ± 0.774

5.566 ± 0.663

5.489 ± 0.625

4.107 ± 0.55

7.14 ± 0.831

2.035 ± 0.375

4.875 ± 0.404

5.029 ± 0.794

8.752 ± 0.792

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.418 ± 0.539

3.724 ± 0.397

6.334 ± 0.955

4.069 ± 0.526

6.603 ± 0.655

7.447 ± 0.574

7.102 ± 0.33

6.142 ± 0.928

1.651 ± 0.215

3.186 ± 0.27
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski