Pseudobacteriovorax antillogorgiicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Oligoflexia; Oligoflexales; Pseudobacteriovoracaceae; Pseudobacteriovorax

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6344 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y6BZD0|A0A1Y6BZD0_9PROT Uncharacterized protein OS=Pseudobacteriovorax antillogorgiicola OX=1513793 GN=SAMN06296036_10912 PE=4 SV=1
MM1 pKa = 7.98RR2 pKa = 11.84YY3 pKa = 9.21VLCSTLLLSIAASSCGEE20 pKa = 4.04SDD22 pKa = 4.6SEE24 pKa = 4.4TSADD28 pKa = 3.43NQTAVSVEE36 pKa = 4.05FAAVAGTEE44 pKa = 4.32SISCEE49 pKa = 3.82TSLTGLGSNQDD60 pKa = 3.53SATLADD66 pKa = 3.99FRR68 pKa = 11.84FYY70 pKa = 10.72IHH72 pKa = 7.67DD73 pKa = 3.63IVFTKK78 pKa = 10.74DD79 pKa = 3.18DD80 pKa = 4.0GSSISLTLDD89 pKa = 3.11EE90 pKa = 5.92NDD92 pKa = 3.34WQTDD96 pKa = 3.32NLALLDD102 pKa = 4.18FQDD105 pKa = 5.23KK106 pKa = 10.94SDD108 pKa = 3.79SCSGDD113 pKa = 3.05EE114 pKa = 4.4KK115 pKa = 10.59DD116 pKa = 3.3THH118 pKa = 7.87KK119 pKa = 10.84EE120 pKa = 3.76VTGTVSDD127 pKa = 3.59TTGISGISFTLGVPEE142 pKa = 5.21DD143 pKa = 5.04LNHH146 pKa = 6.43QDD148 pKa = 3.16QSSASTPLNIVSLFWSWNSGYY169 pKa = 10.8KK170 pKa = 9.93FLRR173 pKa = 11.84ADD175 pKa = 3.45VTPSNGITRR184 pKa = 11.84PSDD187 pKa = 3.23STFSGTTFNIHH198 pKa = 6.53IGSTACTGDD207 pKa = 3.0ATAGEE212 pKa = 5.22DD213 pKa = 3.86VTCTNSNRR221 pKa = 11.84AQIALSDD228 pKa = 4.13FEE230 pKa = 5.88LGTSLVTFDD239 pKa = 4.05YY240 pKa = 8.92ATLVQSHH247 pKa = 7.27NITSDD252 pKa = 2.96VGGAPGCMSGSTDD265 pKa = 3.83PEE267 pKa = 4.28CQGVFSGLGLDD278 pKa = 4.61LSSGTQSTTTQTAFSLQQ295 pKa = 3.31

Molecular weight: 30.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y6BUH0|A0A1Y6BUH0_9PROT Histidine kinase OS=Pseudobacteriovorax antillogorgiicola OX=1513793 GN=SAMN06296036_109102 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 9.35ATKK5 pKa = 10.26KK6 pKa = 9.29KK7 pKa = 6.81TAKK10 pKa = 9.96RR11 pKa = 11.84AAAKK15 pKa = 10.37KK16 pKa = 8.71KK17 pKa = 5.15TTKK20 pKa = 10.51KK21 pKa = 10.22KK22 pKa = 9.23VAKK25 pKa = 8.91KK26 pKa = 6.59TTAKK30 pKa = 10.41KK31 pKa = 9.96KK32 pKa = 8.75ATRR35 pKa = 11.84KK36 pKa = 9.36KK37 pKa = 9.93AAKK40 pKa = 8.44KK41 pKa = 6.31TTAKK45 pKa = 10.35KK46 pKa = 9.84KK47 pKa = 8.89ATRR50 pKa = 11.84KK51 pKa = 8.33STAKK55 pKa = 10.46KK56 pKa = 10.01KK57 pKa = 9.06VAKK60 pKa = 10.34KK61 pKa = 10.09KK62 pKa = 8.6ATKK65 pKa = 10.31KK66 pKa = 9.99KK67 pKa = 8.93VARR70 pKa = 11.84KK71 pKa = 9.23KK72 pKa = 8.76ATKK75 pKa = 10.3KK76 pKa = 10.21KK77 pKa = 8.71VAKK80 pKa = 10.37KK81 pKa = 10.04KK82 pKa = 8.74VAKK85 pKa = 10.47KK86 pKa = 8.99KK87 pKa = 5.33TTKK90 pKa = 10.56KK91 pKa = 10.32KK92 pKa = 9.01VAKK95 pKa = 10.31KK96 pKa = 10.05KK97 pKa = 8.6ATKK100 pKa = 10.36KK101 pKa = 10.29KK102 pKa = 8.68VAKK105 pKa = 10.4KK106 pKa = 8.56KK107 pKa = 5.57TTRR110 pKa = 11.84KK111 pKa = 9.75KK112 pKa = 9.36VAKK115 pKa = 10.01KK116 pKa = 9.94KK117 pKa = 8.55AAKK120 pKa = 9.99RR121 pKa = 11.84ATTKK125 pKa = 10.66RR126 pKa = 11.84KK127 pKa = 4.17TTRR130 pKa = 11.84RR131 pKa = 11.84KK132 pKa = 10.11ASASAA137 pKa = 3.26

Molecular weight: 15.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6344

0

6344

2143815

25

3542

337.9

37.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.281 ± 0.028

1.12 ± 0.012

6.006 ± 0.025

6.503 ± 0.026

4.556 ± 0.021

6.812 ± 0.029

2.168 ± 0.016

6.424 ± 0.025

5.842 ± 0.034

10.271 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.217 ± 0.013

3.97 ± 0.022

4.056 ± 0.019

4.335 ± 0.023

5.185 ± 0.021

7.719 ± 0.028

4.842 ± 0.019

6.274 ± 0.022

1.23 ± 0.011

3.188 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski