Atractylodes mottle virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K2BN37|A0A0K2BN37_9VIRU Helicase OS=Atractylodes mottle virus OX=1702121 PE=3 SV=1
MM1 pKa = 8.1RR2 pKa = 11.84DD3 pKa = 3.64FQVLMLVLALLVLGFVYY20 pKa = 10.81VNINPYY26 pKa = 9.2SPCVVVITGEE36 pKa = 4.04SVRR39 pKa = 11.84IVSCEE44 pKa = 3.63FTPEE48 pKa = 4.0FVALARR54 pKa = 11.84DD55 pKa = 3.78LRR57 pKa = 11.84PAGSCC62 pKa = 3.77

Molecular weight: 6.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K2BN56|A0A0K2BN56_9VIRU Movement protein TGB2 OS=Atractylodes mottle virus OX=1702121 PE=3 SV=1
MM1 pKa = 7.37NSSDD5 pKa = 3.12ATRR8 pKa = 11.84IKK10 pKa = 10.22MLIIGAFAQHH20 pKa = 6.48SSQVSVPICINIYY33 pKa = 9.54RR34 pKa = 11.84RR35 pKa = 11.84AFVKK39 pKa = 10.6VVGQGRR45 pKa = 11.84STYY48 pKa = 9.7ARR50 pKa = 11.84KK51 pKa = 9.59RR52 pKa = 11.84RR53 pKa = 11.84ALSIGRR59 pKa = 11.84CHH61 pKa = 6.27RR62 pKa = 11.84CYY64 pKa = 9.98RR65 pKa = 11.84VYY67 pKa = 10.7PPLPFSKK74 pKa = 10.49KK75 pKa = 9.58CDD77 pKa = 3.27NRR79 pKa = 11.84TCVPGISYY87 pKa = 10.01NVKK90 pKa = 8.28VANYY94 pKa = 8.38ILWGVTEE101 pKa = 4.88VIPHH105 pKa = 6.76PGYY108 pKa = 11.18NFF110 pKa = 3.42

Molecular weight: 12.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2861

62

2036

476.8

53.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.235 ± 0.884

2.761 ± 0.543

4.544 ± 0.504

6.676 ± 0.891

4.998 ± 0.631

6.187 ± 0.469

2.971 ± 0.252

5.662 ± 0.655

5.488 ± 1.462

9.857 ± 1.18

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.202 ± 0.378

4.544 ± 0.854

5.208 ± 0.943

3.565 ± 0.28

5.907 ± 0.845

6.012 ± 0.315

5.033 ± 0.498

6.641 ± 0.85

1.014 ± 0.175

3.495 ± 0.44
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski