Citrus leprosis virus C2

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Kitaviridae; Cilevirus

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M1JAW3|M1JAW3_9VIRU Helicase OS=Citrus leprosis virus C2 OX=2052685 PE=4 SV=1
MM1 pKa = 8.06DD2 pKa = 5.45FYY4 pKa = 11.13TVYY7 pKa = 10.65TFLNLTLGLLTYY19 pKa = 10.53NYY21 pKa = 10.39DD22 pKa = 3.47SLGTFGPTPRR32 pKa = 11.84CTSKK36 pKa = 10.7RR37 pKa = 11.84CSLLPAEE44 pKa = 5.59CSTEE48 pKa = 3.82HH49 pKa = 5.69TVNKK53 pKa = 9.67VVEE56 pKa = 4.26RR57 pKa = 11.84HH58 pKa = 5.0VFTANDD64 pKa = 4.09HH65 pKa = 5.74YY66 pKa = 10.79CISLGYY72 pKa = 9.53RR73 pKa = 11.84KK74 pKa = 10.18NISFSVSTLFIGDD87 pKa = 3.48YY88 pKa = 10.48DD89 pKa = 4.04VYY91 pKa = 11.44GGFEE95 pKa = 4.45CDD97 pKa = 2.88RR98 pKa = 11.84TALSMGIVSNRR109 pKa = 11.84LGFYY113 pKa = 10.5EE114 pKa = 5.77DD115 pKa = 5.2ALFDD119 pKa = 4.01CKK121 pKa = 10.89NYY123 pKa = 10.05NLSYY127 pKa = 10.76GNYY130 pKa = 9.39RR131 pKa = 11.84FEE133 pKa = 4.3FCLNSSVYY141 pKa = 10.92DD142 pKa = 3.53SVLTDD147 pKa = 3.63KK148 pKa = 10.98FYY150 pKa = 10.91TPQIEE155 pKa = 3.93AAAPINTRR163 pKa = 11.84GVEE166 pKa = 4.08VFDD169 pKa = 4.95DD170 pKa = 4.39FLGFTYY176 pKa = 10.71YY177 pKa = 9.17RR178 pKa = 11.84TSCDD182 pKa = 3.56SFCSEE187 pKa = 4.97SKK189 pKa = 10.65FSPDD193 pKa = 2.99FDD195 pKa = 3.94FGNYY199 pKa = 7.4VFYY202 pKa = 10.68FPLCDD207 pKa = 3.38NHH209 pKa = 7.87IPLCYY214 pKa = 10.3DD215 pKa = 3.39GAEE218 pKa = 4.22DD219 pKa = 3.76SCPRR223 pKa = 11.84GYY225 pKa = 10.78SLQTIFVSSLVEE237 pKa = 4.0EE238 pKa = 4.49EE239 pKa = 4.37TEE241 pKa = 3.74KK242 pKa = 10.66LARR245 pKa = 11.84VICVSDD251 pKa = 3.89NEE253 pKa = 4.46PGLTFPAWFRR263 pKa = 11.84DD264 pKa = 3.74NPSTYY269 pKa = 10.96DD270 pKa = 3.82DD271 pKa = 4.25LVGNYY276 pKa = 7.67TINVEE281 pKa = 4.59SKK283 pKa = 10.65CGVAMSKK290 pKa = 10.58KK291 pKa = 9.43MRR293 pKa = 11.84FSRR296 pKa = 11.84YY297 pKa = 8.96GVTGTYY303 pKa = 9.32IDD305 pKa = 5.17DD306 pKa = 4.71IIVVTIDD313 pKa = 3.29EE314 pKa = 4.51VHH316 pKa = 6.32FLTSKK321 pKa = 10.09FCRR324 pKa = 11.84DD325 pKa = 3.56YY326 pKa = 11.37ILFLGYY332 pKa = 9.85RR333 pKa = 11.84DD334 pKa = 4.94GYY336 pKa = 11.62DD337 pKa = 3.18NDD339 pKa = 4.58FSMKK343 pKa = 10.04TYY345 pKa = 9.04FQKK348 pKa = 10.87RR349 pKa = 11.84LNCNSDD355 pKa = 3.39GCWYY359 pKa = 10.75SGVDD363 pKa = 3.34LSRR366 pKa = 11.84ILSHH370 pKa = 7.07CEE372 pKa = 3.12LSLVVEE378 pKa = 4.46KK379 pKa = 11.08KK380 pKa = 9.64EE381 pKa = 3.93ALVSTFTLFNKK392 pKa = 9.33TFGGKK397 pKa = 9.54VGFIPVGLSDD407 pKa = 4.45SVLFGYY413 pKa = 10.51NVFLFRR419 pKa = 11.84GFYY422 pKa = 9.92SYY424 pKa = 11.33SSSSVTLKK432 pKa = 8.39STKK435 pKa = 10.09YY436 pKa = 10.05FLVKK440 pKa = 10.58AEE442 pKa = 4.49AEE444 pKa = 4.2WYY446 pKa = 7.22MKK448 pKa = 11.21LMMFFADD455 pKa = 5.39DD456 pKa = 3.55VLKK459 pKa = 11.25VCFEE463 pKa = 4.73TIFSVLLGALSSCLSFIFNIGGCCFRR489 pKa = 11.84LVFLCVMDD497 pKa = 4.69SIIILLCLLPCYY509 pKa = 9.95CHH511 pKa = 7.28LGFILCSVSNLIIKK525 pKa = 10.47LFMKK529 pKa = 10.24NNCCFGISDD538 pKa = 4.25AVASSFF544 pKa = 4.31

Molecular weight: 61.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M1J7K9|M1J7K9_9VIRU p61 OS=Citrus leprosis virus C2 OX=2052685 PE=4 SV=1
MM1 pKa = 7.77DD2 pKa = 3.27QRR4 pKa = 11.84FLRR7 pKa = 11.84GASVLNLSNKK17 pKa = 9.48RR18 pKa = 11.84EE19 pKa = 4.01KK20 pKa = 10.98LKK22 pKa = 10.42TNASVSLLSDD32 pKa = 3.53IQQILLRR39 pKa = 11.84YY40 pKa = 7.55IQKK43 pKa = 10.39PYY45 pKa = 10.02VLLMYY50 pKa = 10.67ACVLVLFAMHH60 pKa = 6.85IDD62 pKa = 3.84AGTHH66 pKa = 7.5DD67 pKa = 4.75ILDD70 pKa = 4.44DD71 pKa = 4.72LAQQFPNNPVIEE83 pKa = 4.18WARR86 pKa = 11.84NNFFRR91 pKa = 11.84LCGALVFIPVITDD104 pKa = 2.94ARR106 pKa = 11.84KK107 pKa = 8.45EE108 pKa = 3.91HH109 pKa = 5.76QLYY112 pKa = 10.33FGMVIALFLLGFPQRR127 pKa = 11.84SIFEE131 pKa = 4.19YY132 pKa = 10.2FVYY135 pKa = 10.57SLSLHH140 pKa = 6.29VYY142 pKa = 9.79AKK144 pKa = 10.14SKK146 pKa = 11.06HH147 pKa = 5.14PFTRR151 pKa = 11.84IFILVITVVSCVLFGVFTNDD171 pKa = 3.36QLRR174 pKa = 11.84KK175 pKa = 9.91LYY177 pKa = 10.47QEE179 pKa = 4.18LPKK182 pKa = 10.78VPTHH186 pKa = 6.25PVNKK190 pKa = 9.71VEE192 pKa = 4.09RR193 pKa = 11.84VVNRR197 pKa = 11.84VGGQQSFSGG206 pKa = 3.64

Molecular weight: 23.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

4007

67

2504

572.4

64.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.091 ± 0.488

2.945 ± 0.538

6.613 ± 0.597

4.842 ± 0.448

6.289 ± 0.819

5.141 ± 0.5

2.595 ± 0.311

6.114 ± 0.519

5.54 ± 0.755

9.733 ± 0.402

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.997 ± 0.286

4.817 ± 0.509

3.893 ± 1.183

2.62 ± 0.627

5.49 ± 0.535

8.56 ± 0.567

5.091 ± 0.42

8.111 ± 0.291

0.574 ± 0.092

3.943 ± 0.486
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski