Gammapapillomavirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 5.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALD5|A0A2D2ALD5_9PAPI Protein E7 OS=Gammapapillomavirus 6 OX=1175848 GN=E7 PE=3 SV=1
MM1 pKa = 7.99RR2 pKa = 11.84STEE5 pKa = 3.95PTIKK9 pKa = 10.53DD10 pKa = 3.03INVEE14 pKa = 4.1LEE16 pKa = 3.91PLVIPEE22 pKa = 4.25NLLCGEE28 pKa = 4.2VSLEE32 pKa = 4.02EE33 pKa = 4.11EE34 pKa = 4.3EE35 pKa = 4.96EE36 pKa = 4.2EE37 pKa = 5.09QEE39 pKa = 4.21EE40 pKa = 4.51QAQSPYY46 pKa = 10.79RR47 pKa = 11.84VVTQCKK53 pKa = 8.94HH54 pKa = 5.73CSKK57 pKa = 10.25QLCVYY62 pKa = 9.84VVATDD67 pKa = 3.0VGIRR71 pKa = 11.84IFEE74 pKa = 4.21HH75 pKa = 5.95VLCGDD80 pKa = 4.58LDD82 pKa = 4.51LVCPTCGRR90 pKa = 11.84QQHH93 pKa = 4.95RR94 pKa = 11.84HH95 pKa = 4.53GGQRR99 pKa = 11.84QQ100 pKa = 2.95

Molecular weight: 11.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AL95|A0A2D2AL95_9PAPI E4 OS=Gammapapillomavirus 6 OX=1175848 GN=E4 PE=4 SV=1
MM1 pKa = 7.53EE2 pKa = 4.96NLVEE6 pKa = 5.3RR7 pKa = 11.84FDD9 pKa = 4.24AVQDD13 pKa = 3.82KK14 pKa = 10.77LLSLYY19 pKa = 10.19EE20 pKa = 4.39AGHH23 pKa = 6.57MDD25 pKa = 4.48LEE27 pKa = 4.49SQILHH32 pKa = 6.82WDD34 pKa = 3.83LEE36 pKa = 4.33RR37 pKa = 11.84QEE39 pKa = 5.0NVLLHH44 pKa = 6.22FARR47 pKa = 11.84KK48 pKa = 9.59QGIQNIGMQRR58 pKa = 11.84VPPLAATEE66 pKa = 4.25QKK68 pKa = 10.86AKK70 pKa = 8.82TAIYY74 pKa = 8.57MGLVLRR80 pKa = 11.84SLKK83 pKa = 10.26KK84 pKa = 10.18SPYY87 pKa = 9.36SQEE90 pKa = 3.51SWTLTEE96 pKa = 4.17TSNEE100 pKa = 4.05LFMTAPQNTFKK111 pKa = 11.0KK112 pKa = 9.63GGKK115 pKa = 7.76TIEE118 pKa = 3.85VLYY121 pKa = 11.05DD122 pKa = 3.51NEE124 pKa = 4.17EE125 pKa = 4.27TKK127 pKa = 11.15AMPYY131 pKa = 8.83TLWTAIYY138 pKa = 9.71YY139 pKa = 10.15QDD141 pKa = 5.39ADD143 pKa = 4.33DD144 pKa = 4.58MWHH147 pKa = 5.93KK148 pKa = 9.11TQGQVDD154 pKa = 4.28VKK156 pKa = 11.02GLFYY160 pKa = 11.25VDD162 pKa = 2.93ITGSKK167 pKa = 8.97TYY169 pKa = 10.99YY170 pKa = 10.56EE171 pKa = 5.4DD172 pKa = 3.5FAKK175 pKa = 10.58DD176 pKa = 3.1AKK178 pKa = 10.8KK179 pKa = 10.8YY180 pKa = 10.97GEE182 pKa = 4.03TGQWQVKK189 pKa = 8.19TGNDD193 pKa = 3.43TLFGPSIASTSEE205 pKa = 3.99DD206 pKa = 4.73NVDD209 pKa = 2.98GWQTIATPDD218 pKa = 3.0TGGPRR223 pKa = 11.84RR224 pKa = 11.84RR225 pKa = 11.84RR226 pKa = 11.84GRR228 pKa = 11.84PRR230 pKa = 11.84RR231 pKa = 11.84RR232 pKa = 11.84THH234 pKa = 6.32SATTSATSEE243 pKa = 4.16TDD245 pKa = 2.8TSSEE249 pKa = 3.7DD250 pKa = 2.95RR251 pKa = 11.84RR252 pKa = 11.84QRR254 pKa = 11.84RR255 pKa = 11.84GRR257 pKa = 11.84HH258 pKa = 3.97GKK260 pKa = 9.46RR261 pKa = 11.84RR262 pKa = 11.84SKK264 pKa = 10.23RR265 pKa = 11.84LRR267 pKa = 11.84WGSEE271 pKa = 3.42SSARR275 pKa = 11.84TPSPVGQGHH284 pKa = 6.95RR285 pKa = 11.84SPNKK289 pKa = 9.85HH290 pKa = 5.51YY291 pKa = 7.37PTRR294 pKa = 11.84LARR297 pKa = 11.84LQAEE301 pKa = 4.39AGDD304 pKa = 4.06PPVLLVKK311 pKa = 10.91GPANTTKK318 pKa = 9.94CWRR321 pKa = 11.84YY322 pKa = 9.14RR323 pKa = 11.84VKK325 pKa = 10.57LRR327 pKa = 11.84HH328 pKa = 6.56RR329 pKa = 11.84DD330 pKa = 3.35LFLCISTAFSWVGEE344 pKa = 4.38TGCDD348 pKa = 2.62RR349 pKa = 11.84VGCARR354 pKa = 11.84VLVGFVNEE362 pKa = 4.18TQRR365 pKa = 11.84EE366 pKa = 4.12RR367 pKa = 11.84FITTVRR373 pKa = 11.84LPKK376 pKa = 10.19GCTYY380 pKa = 11.38AFGNIDD386 pKa = 3.52SLL388 pKa = 4.29

Molecular weight: 44.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2317

100

634

386.2

43.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.388 ± 0.367

2.287 ± 0.733

6.647 ± 0.451

5.783 ± 0.78

3.712 ± 0.455

6.56 ± 0.781

1.813 ± 0.312

5.222 ± 0.768

4.963 ± 0.839

8.2 ± 0.796

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.813 ± 0.485

4.143 ± 0.676

6.388 ± 0.786

4.748 ± 0.403

5.913 ± 0.86

6.949 ± 0.426

7.035 ± 1.163

7.208 ± 0.684

1.252 ± 0.257

2.978 ± 0.275
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski