Bifidobacterium phage BadAargau2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Badaztecvirus; Bifidobacterium virus BadAargau2

Average proteome isoelectric point is 5.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 23 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G6Y0H1|A0A6G6Y0H1_9CAUD Uncharacterized protein OS=Bifidobacterium phage BadAargau2 OX=2713242 GN=BAAR0010003c01_00012 PE=4 SV=1
MM1 pKa = 7.3QAIKK5 pKa = 10.92DD6 pKa = 3.99EE7 pKa = 4.56LTEE10 pKa = 4.4SMDD13 pKa = 4.3DD14 pKa = 3.73AVEE17 pKa = 3.95LASAVVADD25 pKa = 4.48WSGHH29 pKa = 4.15MDD31 pKa = 3.14VTVRR35 pKa = 11.84PEE37 pKa = 3.46YY38 pKa = 9.26MAIVVTCGPVRR49 pKa = 11.84LWIKK53 pKa = 10.61APYY56 pKa = 9.49GSSLITAYY64 pKa = 10.59FPVSGYY70 pKa = 11.16AEE72 pKa = 4.16SCDD75 pKa = 3.22IEE77 pKa = 4.71HH78 pKa = 6.58EE79 pKa = 4.42NKK81 pKa = 10.35LGEE84 pKa = 4.68YY85 pKa = 8.71FTMIQSSDD93 pKa = 3.7MEE95 pKa = 4.1QLRR98 pKa = 11.84YY99 pKa = 10.61DD100 pKa = 3.07IMNWIRR106 pKa = 11.84VRR108 pKa = 11.84LVMSCLL114 pKa = 3.45

Molecular weight: 12.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G6Y069|A0A6G6Y069_9CAUD Uncharacterized protein OS=Bifidobacterium phage BadAargau2 OX=2713242 GN=BAAR0010003c01_00020 PE=4 SV=1
MM1 pKa = 7.42ARR3 pKa = 11.84SKK5 pKa = 9.96KK6 pKa = 4.7TTKK9 pKa = 10.01RR10 pKa = 11.84QRR12 pKa = 11.84QAAQRR17 pKa = 11.84KK18 pKa = 8.17RR19 pKa = 11.84NAQIRR24 pKa = 11.84SAQVARR30 pKa = 11.84NAARR34 pKa = 11.84NIGTINPTKK43 pKa = 10.73VSVGTLNKK51 pKa = 10.26LSRR54 pKa = 11.84PQLEE58 pKa = 3.69RR59 pKa = 11.84LAQNVGNEE67 pKa = 4.09VYY69 pKa = 10.08DD70 pKa = 4.03AKK72 pKa = 11.28SSVQKK77 pKa = 9.98YY78 pKa = 9.67LRR80 pKa = 11.84SKK82 pKa = 10.06PYY84 pKa = 8.6YY85 pKa = 8.63HH86 pKa = 7.34APPVSITKK94 pKa = 10.12RR95 pKa = 11.84EE96 pKa = 3.84RR97 pKa = 11.84EE98 pKa = 3.83FASRR102 pKa = 11.84KK103 pKa = 9.9VPTDD107 pKa = 3.28QQIAAAPPKK116 pKa = 9.7KK117 pKa = 10.34AKK119 pKa = 10.18LLRR122 pKa = 11.84QQKK125 pKa = 10.16RR126 pKa = 11.84KK127 pKa = 8.18ITAARR132 pKa = 11.84NKK134 pKa = 10.45LEE136 pKa = 3.62DD137 pKa = 3.23WKK139 pKa = 10.93RR140 pKa = 11.84YY141 pKa = 7.12NAQVMAGRR149 pKa = 11.84TARR152 pKa = 11.84DD153 pKa = 3.22EE154 pKa = 4.28RR155 pKa = 11.84ADD157 pKa = 3.66ALNGTGGKK165 pKa = 9.11EE166 pKa = 3.85SRR168 pKa = 11.84TRR170 pKa = 11.84DD171 pKa = 3.0AGKK174 pKa = 10.58RR175 pKa = 11.84STTDD179 pKa = 2.48IDD181 pKa = 3.53HH182 pKa = 7.57LDD184 pKa = 3.44RR185 pKa = 11.84YY186 pKa = 10.96RR187 pKa = 11.84NVLKK191 pKa = 10.81NPQIVSKK198 pKa = 11.11LSDD201 pKa = 3.47DD202 pKa = 4.03EE203 pKa = 4.04LRR205 pKa = 11.84KK206 pKa = 9.96EE207 pKa = 3.5IRR209 pKa = 11.84ARR211 pKa = 11.84TKK213 pKa = 10.49DD214 pKa = 3.45LKK216 pKa = 10.1NAKK219 pKa = 9.91NILEE223 pKa = 4.33NGVGRR228 pKa = 11.84ISEE231 pKa = 4.01KK232 pKa = 10.86DD233 pKa = 3.03NAYY236 pKa = 10.36VEE238 pKa = 4.48RR239 pKa = 11.84RR240 pKa = 11.84LKK242 pKa = 11.0AGFGQSALDD251 pKa = 3.47GWRR254 pKa = 11.84KK255 pKa = 9.63LSRR258 pKa = 11.84TEE260 pKa = 4.02RR261 pKa = 11.84YY262 pKa = 10.09SLVNQTSLLNRR273 pKa = 11.84IEE275 pKa = 4.6FYY277 pKa = 10.88SVYY280 pKa = 10.65NEE282 pKa = 3.69EE283 pKa = 4.03THH285 pKa = 7.47AYY287 pKa = 8.91EE288 pKa = 4.68PWDD291 pKa = 3.6HH292 pKa = 7.17DD293 pKa = 3.49RR294 pKa = 11.84KK295 pKa = 9.98EE296 pKa = 4.0QVKK299 pKa = 8.68QEE301 pKa = 4.13RR302 pKa = 11.84SDD304 pKa = 3.04IMSFIRR310 pKa = 11.84NARR313 pKa = 11.84NISNASLEE321 pKa = 4.16

Molecular weight: 36.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

23

0

23

5929

55

710

257.8

28.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.096 ± 0.587

0.978 ± 0.186

7.59 ± 0.503

4.992 ± 0.295

3.542 ± 0.339

6.831 ± 0.478

1.737 ± 0.213

5.768 ± 0.237

5.347 ± 0.472

6.612 ± 0.338

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.154 ± 0.286

6.409 ± 0.48

3.846 ± 0.326

4.284 ± 0.486

5.363 ± 0.55

6.814 ± 0.476

6.612 ± 0.451

5.65 ± 0.371

1.636 ± 0.145

4.739 ± 0.306
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski