Pedobacter yulinensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter

Average proteome isoelectric point is 7.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3772 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T3HND6|A0A2T3HND6_9SPHI Uncharacterized protein OS=Pedobacter yulinensis OX=2126353 GN=C7T94_03920 PE=4 SV=1
MM1 pKa = 6.72TQSDD5 pKa = 4.87LLALLQQGYY14 pKa = 8.99PGGAGSGSMDD24 pKa = 3.34ISTLQNPAYY33 pKa = 8.37TALFTQLGITSTTIPLNNSTGFAAEE58 pKa = 3.99GANIVFKK65 pKa = 11.4GNVNGSFFGLVNPQVTIQFSPDD87 pKa = 3.36SVNSGAFILLMHH99 pKa = 6.84FALPGAWTFSQSIPFFAGSIYY120 pKa = 9.82DD121 pKa = 3.85TLVLDD126 pKa = 4.13TSVAPALVMTSGPATDD142 pKa = 4.3PVNNAAATASGLYY155 pKa = 10.13FYY157 pKa = 11.26GLFSHH162 pKa = 6.3TQGPASFTLALSLLEE177 pKa = 4.6AFTSEE182 pKa = 4.12STVFGPVGLDD192 pKa = 2.97MSVPGQEE199 pKa = 4.53SINMQLALGSGTISNLFGQGSVSLTLSVTLFAGLLPGIDD238 pKa = 3.58QYY240 pKa = 12.02QKK242 pKa = 11.2GVLFTASLAFGQSTLNLGALLSGEE266 pKa = 4.05ADD268 pKa = 3.07GVLNLEE274 pKa = 4.36VTGTALAIDD283 pKa = 4.15EE284 pKa = 4.68SAINTYY290 pKa = 10.33FGSNNGIVSSLPGQFQTDD308 pKa = 3.41EE309 pKa = 4.21SLIAITAMNFGIGLTSHH326 pKa = 5.94NLEE329 pKa = 4.14YY330 pKa = 11.56AMMTISVLQGEE341 pKa = 5.06LWNVWMNGSTPVISIGNLAFTFSIFQPFGASPLYY375 pKa = 9.65EE376 pKa = 4.29FNFAGIFEE384 pKa = 5.1LGGVVPILIQAQLGNAEE401 pKa = 4.52DD402 pKa = 5.25LILSGQLQPGEE413 pKa = 4.3EE414 pKa = 4.31PGVAALIAAFYY425 pKa = 8.4PQQTTVPADD434 pKa = 3.52LVFEE438 pKa = 5.24KK439 pKa = 10.2IDD441 pKa = 3.69FQADD445 pKa = 3.01ISQGTFNADD454 pKa = 3.08LVIAGEE460 pKa = 4.26WEE462 pKa = 4.31FGFGDD467 pKa = 3.44NGSIAFEE474 pKa = 4.01EE475 pKa = 4.37LSMFFSYY482 pKa = 10.8DD483 pKa = 3.05SSNTPFIQAGVEE495 pKa = 4.37GIFRR499 pKa = 11.84IDD501 pKa = 3.15QTNQFDD507 pKa = 3.95IALTLSNTNFTFSGAWKK524 pKa = 8.9DD525 pKa = 3.21TGTPITYY532 pKa = 9.44IDD534 pKa = 3.25IVMALGLYY542 pKa = 9.15GLPQLPDD549 pKa = 3.14IDD551 pKa = 5.41LSLTGAKK558 pKa = 8.75LTFDD562 pKa = 3.73SQNLIFTFEE571 pKa = 4.57LDD573 pKa = 3.54SKK575 pKa = 11.57SFGDD579 pKa = 3.82ALIIAGKK586 pKa = 8.25STTGAWGFVFGLEE599 pKa = 4.07ATPKK603 pKa = 10.58GEE605 pKa = 5.11PINIDD610 pKa = 2.86ITNIPVVGNLVPAGDD625 pKa = 4.22DD626 pKa = 3.39TLSITNLRR634 pKa = 11.84FVGATNSLPAVTLSAAQQAIVGTQLSSGITLSIDD668 pKa = 3.6FAVGTLLSEE677 pKa = 4.29SFTVRR682 pKa = 11.84FALSDD687 pKa = 3.57GSQYY691 pKa = 9.15DD692 pKa = 3.96TPPPPPAQSTTLWQPPAPQQSGLPASAPAGSLATWVKK729 pKa = 8.53VQRR732 pKa = 11.84SFGPVQIDD740 pKa = 3.36SVGFQIVNGNSLALLVSGGVSLGGLSIGLTALEE773 pKa = 3.91AVIPISKK780 pKa = 9.72PFTPSFSLGGLEE792 pKa = 4.11VAYY795 pKa = 9.2TGTGFSVAGGLLTVPGKK812 pKa = 8.85TPAEE816 pKa = 3.93YY817 pKa = 10.59LGNLSVNAGPFGVTAFGMYY836 pKa = 8.81STVAGQPSLFAYY848 pKa = 10.21LAVSVPLGGPPFFFVTGLAGGFGYY872 pKa = 10.4NAQIQLPTIEE882 pKa = 4.88NVATYY887 pKa = 9.87PLIQAVTQTPPQSASQVQAEE907 pKa = 4.23LQQLVSTQNNQNWLAAGIGFSSFEE931 pKa = 4.05MLNSFALLTVSFGNTFAVALMGEE954 pKa = 4.54SSLSVPLSTKK964 pKa = 10.84DD965 pKa = 3.46EE966 pKa = 4.38IKK968 pKa = 10.74VEE970 pKa = 4.77PIAEE974 pKa = 4.05AQMEE978 pKa = 4.25ILIEE982 pKa = 3.86FLPSNGIFAVNAQLTPSSYY1001 pKa = 11.19VLSKK1005 pKa = 10.47NAKK1008 pKa = 7.79LTGGFAFDD1016 pKa = 4.06LWFSPSPYY1024 pKa = 10.53AGDD1027 pKa = 3.66FVITLGGYY1035 pKa = 8.53NPYY1038 pKa = 10.24YY1039 pKa = 10.53VPQKK1043 pKa = 10.21YY1044 pKa = 9.09YY1045 pKa = 10.13PAVPRR1050 pKa = 11.84LGISWQLSSLMSITGSAYY1068 pKa = 9.79FALTPSVIMAGGSLNAVYY1086 pKa = 10.01HH1087 pKa = 6.27AGNLRR1092 pKa = 11.84AWFTAEE1098 pKa = 3.61ADD1100 pKa = 3.45FLIRR1104 pKa = 11.84FKK1106 pKa = 10.58PFSFIVSISVTVGVSMKK1123 pKa = 10.75LNLLFTTTTITLSVGLGLQLWGLPFGGTARR1153 pKa = 11.84MDD1155 pKa = 3.61LSIISISINFGSSLSKK1171 pKa = 10.45PPEE1174 pKa = 4.05VNWDD1178 pKa = 3.04IFTEE1182 pKa = 4.41SFLPPPQSVPPAGQASPLAPQALDD1206 pKa = 3.34ATGVPVTTTDD1216 pKa = 3.96SILSLSASSGLLQSISTYY1234 pKa = 7.18TWQVDD1239 pKa = 3.37PEE1241 pKa = 4.6TFVMLLTLQIPATSAVVNTTDD1262 pKa = 2.95EE1263 pKa = 4.49HH1264 pKa = 6.4NNPVSTPVSGSWNTNLGVGPMGVGPGGLTAALTIQITAPAAGDD1307 pKa = 3.37EE1308 pKa = 4.56DD1309 pKa = 4.27VWVAQAVTGQVASGLWANTTNTMSTDD1335 pKa = 3.02GTLQNVLVGVSLVPVPPQPATTAAIDD1361 pKa = 4.22LSLLLYY1367 pKa = 10.82DD1368 pKa = 4.72PGNPVSWNWSSPQVVNTDD1386 pKa = 3.37PYY1388 pKa = 11.71GNDD1391 pKa = 2.84NPMAEE1396 pKa = 4.44MQSSLIDD1403 pKa = 3.29ATVAATRR1410 pKa = 11.84SSWINSLIAQGFALSNEE1427 pKa = 3.9VDD1429 pKa = 3.48VSDD1432 pKa = 5.35FSSNANNLLLSAPALRR1448 pKa = 11.84LAGEE1452 pKa = 4.35EE1453 pKa = 4.15KK1454 pKa = 10.91AEE1456 pKa = 4.21SEE1458 pKa = 4.36

Molecular weight: 152.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T3HK36|A0A2T3HK36_9SPHI Uncharacterized protein OS=Pedobacter yulinensis OX=2126353 GN=C7T94_09135 PE=4 SV=1
MM1 pKa = 7.07KK2 pKa = 9.48TVCRR6 pKa = 11.84TRR8 pKa = 11.84CRR10 pKa = 11.84QRR12 pKa = 11.84KK13 pKa = 7.44SLRR16 pKa = 11.84NDD18 pKa = 2.56SSTRR22 pKa = 11.84GIGLRR27 pKa = 11.84SIAGRR32 pKa = 11.84VALLDD37 pKa = 3.67GSLTITCPEE46 pKa = 3.95KK47 pKa = 10.52GGTRR51 pKa = 11.84ILIRR55 pKa = 11.84FPLATVGQTGKK66 pKa = 10.37YY67 pKa = 8.79VPNASRR73 pKa = 11.84PAQLTDD79 pKa = 3.45LEE81 pKa = 4.61TDD83 pKa = 3.57GGQPAFYY90 pKa = 10.76GG91 pKa = 3.65

Molecular weight: 9.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3772

0

3772

1296689

25

2386

343.8

38.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.866 ± 0.041

0.794 ± 0.012

5.167 ± 0.026

5.606 ± 0.043

4.873 ± 0.027

7.403 ± 0.035

1.899 ± 0.023

6.061 ± 0.035

5.747 ± 0.035

9.91 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.275 ± 0.017

4.826 ± 0.043

4.159 ± 0.024

3.92 ± 0.024

5.326 ± 0.031

6.161 ± 0.03

5.507 ± 0.038

6.484 ± 0.031

1.214 ± 0.018

3.801 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski