Dysgonomonas gadei ATCC BAA-286

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Dysgonomonas; Dysgonomonas gadei

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4153 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F5IZZ3|F5IZZ3_9BACT Uncharacterized protein OS=Dysgonomonas gadei ATCC BAA-286 OX=742766 GN=HMPREF9455_02660 PE=3 SV=1
MM1 pKa = 7.55SNEE4 pKa = 4.21KK5 pKa = 10.71DD6 pKa = 3.5LIQYY10 pKa = 10.66DD11 pKa = 3.52EE12 pKa = 4.93DD13 pKa = 4.26DD14 pKa = 3.52AVKK17 pKa = 10.31FIQNYY22 pKa = 9.4LPQEE26 pKa = 4.17MKK28 pKa = 10.74GKK30 pKa = 8.27YY31 pKa = 8.83TNDD34 pKa = 3.51EE35 pKa = 3.67INYY38 pKa = 9.76IIDD41 pKa = 3.43IVYY44 pKa = 10.59DD45 pKa = 4.5FYY47 pKa = 11.76DD48 pKa = 3.41EE49 pKa = 4.32KK50 pKa = 11.58GFMNDD55 pKa = 2.92EE56 pKa = 4.07TDD58 pKa = 3.42EE59 pKa = 4.31EE60 pKa = 5.04SVVDD64 pKa = 3.6IDD66 pKa = 3.52EE67 pKa = 4.91DD68 pKa = 4.4EE69 pKa = 4.12IVAYY73 pKa = 8.88VLKK76 pKa = 9.44YY77 pKa = 8.61TKK79 pKa = 9.89KK80 pKa = 10.52DD81 pKa = 3.07KK82 pKa = 11.33VNNFSEE88 pKa = 4.69DD89 pKa = 3.29EE90 pKa = 3.94IAFIIQGEE98 pKa = 4.22LAYY101 pKa = 10.17CDD103 pKa = 3.56SIGIFEE109 pKa = 4.29

Molecular weight: 12.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F5J3P4|F5J3P4_9BACT Uncharacterized protein OS=Dysgonomonas gadei ATCC BAA-286 OX=742766 GN=HMPREF9455_03961 PE=4 SV=1
MM1 pKa = 7.23YY2 pKa = 10.68SDD4 pKa = 4.0YY5 pKa = 11.62LNLKK9 pKa = 10.05LVTLSHH15 pKa = 6.38YY16 pKa = 10.53CRR18 pKa = 11.84ALPSLPSLLALPKK31 pKa = 10.33SKK33 pKa = 10.68QKK35 pKa = 11.15ASAKK39 pKa = 10.25FLGDD43 pKa = 3.93LSTACRR49 pKa = 11.84LKK51 pKa = 9.71VTNGLSPRR59 pKa = 11.84PFLRR63 pKa = 11.84RR64 pKa = 11.84LHH66 pKa = 5.04WTGARR71 pKa = 11.84LRR73 pKa = 11.84NQCASADD80 pKa = 3.93AIVRR84 pKa = 11.84QSPFEE89 pKa = 3.99NKK91 pKa = 8.62ICVSQRR97 pKa = 11.84HH98 pKa = 5.0TLHH101 pKa = 6.07GRR103 pKa = 11.84APVRR107 pKa = 11.84RR108 pKa = 11.84EE109 pKa = 3.31RR110 pKa = 11.84LKK112 pKa = 11.01NEE114 pKa = 3.88NVFEE118 pKa = 4.94LII120 pKa = 4.32

Molecular weight: 13.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4153

0

4153

1514011

29

2478

364.6

41.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.458 ± 0.036

0.949 ± 0.012

5.82 ± 0.027

6.199 ± 0.038

4.775 ± 0.026

6.704 ± 0.036

1.642 ± 0.014

7.841 ± 0.043

7.298 ± 0.034

8.811 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.5 ± 0.016

5.755 ± 0.033

3.592 ± 0.02

3.235 ± 0.02

4.035 ± 0.021

6.613 ± 0.027

5.663 ± 0.031

6.14 ± 0.026

1.267 ± 0.016

4.703 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski