Sodalis sp. TME1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis; unclassified Sodalis

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2289 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J7D2U5|A0A1J7D2U5_9GAMM Outer membrane protein A OS=Sodalis sp. TME1 OX=1912097 GN=ompA PE=3 SV=1
MM1 pKa = 7.59SEE3 pKa = 3.97QNNTEE8 pKa = 3.83MAFQIQRR15 pKa = 11.84IYY17 pKa = 10.13TKK19 pKa = 10.3DD20 pKa = 3.43VSFEE24 pKa = 4.02APNAPKK30 pKa = 10.45VFQQEE35 pKa = 3.95WQPEE39 pKa = 4.07IKK41 pKa = 10.36LDD43 pKa = 3.84LDD45 pKa = 3.92TASSQLAEE53 pKa = 4.5EE54 pKa = 4.57IYY56 pKa = 10.6EE57 pKa = 4.17VVLRR61 pKa = 11.84VTVTATLGDD70 pKa = 3.8DD71 pKa = 3.5TAFLCEE77 pKa = 4.07VQQAGIFTISGIDD90 pKa = 3.6GTQMAHH96 pKa = 7.07CLGAYY101 pKa = 9.15CPNILFPYY109 pKa = 9.96ARR111 pKa = 11.84EE112 pKa = 4.5CITSQVSRR120 pKa = 11.84GTFPQLNLAPVNFDD134 pKa = 3.64ALFMNYY140 pKa = 9.34LQQQADD146 pKa = 4.24GEE148 pKa = 4.82GSQPAQDD155 pKa = 3.29AA156 pKa = 3.8

Molecular weight: 17.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J7D1T7|A0A1J7D1T7_9GAMM Tyr recombinase domain-containing protein OS=Sodalis sp. TME1 OX=1912097 GN=BK025_17425 PE=4 SV=1
MM1 pKa = 7.01SCWWKK6 pKa = 10.02PLSQLCLLLFPLTVAAEE23 pKa = 4.15NGDD26 pKa = 3.87ALVTRR31 pKa = 11.84LEE33 pKa = 4.1SLLRR37 pKa = 11.84QQRR40 pKa = 11.84VDD42 pKa = 2.99SSLVQKK48 pKa = 9.29VTLKK52 pKa = 10.16TPAKK56 pKa = 9.52LLPGCPSPHH65 pKa = 6.43LQLASHH71 pKa = 6.47GRR73 pKa = 11.84LSGNMSVTARR83 pKa = 11.84CGDD86 pKa = 3.01RR87 pKa = 11.84RR88 pKa = 11.84YY89 pKa = 10.03FLQIQVRR96 pKa = 11.84ARR98 pKa = 11.84GDD100 pKa = 3.09YY101 pKa = 8.89WVAARR106 pKa = 11.84ALYY109 pKa = 10.69AGTSLSAKK117 pKa = 10.27DD118 pKa = 3.12IVKK121 pKa = 10.09EE122 pKa = 3.8HH123 pKa = 6.82GEE125 pKa = 4.04LVGQARR131 pKa = 11.84NVIFATQPVTGSLTTRR147 pKa = 11.84TIQAGQPLAATMLRR161 pKa = 11.84APWKK165 pKa = 9.52VRR167 pKa = 11.84QGNPVAVVSRR177 pKa = 11.84GPGFQVRR184 pKa = 11.84HH185 pKa = 5.45YY186 pKa = 9.63GKK188 pKa = 10.6AMSDD192 pKa = 3.24AAVGDD197 pKa = 3.92TLRR200 pKa = 11.84VRR202 pKa = 11.84LASGQMVSGAVDD214 pKa = 3.28NQGVVLQNEE223 pKa = 4.43RR224 pKa = 11.84AFSSFSAPGRR234 pKa = 3.74

Molecular weight: 25.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2289

0

2289

562918

29

1342

245.9

27.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.379 ± 0.075

1.112 ± 0.021

5.408 ± 0.042

5.419 ± 0.056

3.641 ± 0.033

7.394 ± 0.051

2.367 ± 0.025

5.63 ± 0.044

3.911 ± 0.044

11.033 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.701 ± 0.022

3.412 ± 0.042

4.599 ± 0.035

4.617 ± 0.043

6.535 ± 0.053

5.576 ± 0.039

5.201 ± 0.03

6.931 ± 0.047

1.342 ± 0.023

2.785 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski