Corynebacterium doosanense CAU 212 = DSM 45436

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium doosanense

Average proteome isoelectric point is 5.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2476 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A097IJK7|A0A097IJK7_9CORY Uncharacterized protein OS=Corynebacterium doosanense CAU 212 = DSM 45436 OX=558173 GN=CDOO_12050 PE=4 SV=1
MM1 pKa = 7.52SKK3 pKa = 10.22FAVAAVIATPLVLVACGSGDD23 pKa = 3.97DD24 pKa = 4.31VEE26 pKa = 4.75EE27 pKa = 4.18QAASASTVTSQATAASTTQTSSTTSASTSASEE59 pKa = 4.27SAEE62 pKa = 3.87GEE64 pKa = 4.51TPSAAADD71 pKa = 3.72QPSGSAADD79 pKa = 3.85GGAAPVLEE87 pKa = 4.3NPFEE91 pKa = 4.6NGDD94 pKa = 3.72IEE96 pKa = 4.69VAQPDD101 pKa = 4.21PVQGRR106 pKa = 11.84PASAEE111 pKa = 3.84EE112 pKa = 4.33TEE114 pKa = 4.23ALSNLVNGIYY124 pKa = 9.1QQPSLHH130 pKa = 6.24GFMMYY135 pKa = 9.57MPNHH139 pKa = 5.81TCAATLEE146 pKa = 4.25AQGGIEE152 pKa = 4.73AYY154 pKa = 10.34SLDD157 pKa = 5.05GIPDD161 pKa = 3.27MPMNQFPGYY170 pKa = 9.47SEE172 pKa = 4.24SRR174 pKa = 11.84VTAIEE179 pKa = 4.04NQTVTDD185 pKa = 3.65SGDD188 pKa = 3.36RR189 pKa = 11.84ASATVTVQSAEE200 pKa = 4.24GPSTGTMVFQHH211 pKa = 6.69EE212 pKa = 4.15GGEE215 pKa = 4.25WKK217 pKa = 10.43FCSS220 pKa = 3.7

Molecular weight: 22.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A097IJ51|A0A097IJ51_9CORY Uncharacterized protein OS=Corynebacterium doosanense CAU 212 = DSM 45436 OX=558173 GN=CDOO_01860 PE=4 SV=1
MM1 pKa = 7.5TKK3 pKa = 10.27GKK5 pKa = 8.58KK6 pKa = 7.73TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.46HH19 pKa = 4.41GFRR22 pKa = 11.84IKK24 pKa = 9.68MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.72KK40 pKa = 10.22GRR42 pKa = 11.84KK43 pKa = 9.08SLTAA47 pKa = 4.07

Molecular weight: 5.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2476

0

2476

780190

40

2999

315.1

34.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.958 ± 0.066

0.601 ± 0.013

6.363 ± 0.038

6.409 ± 0.047

3.172 ± 0.027

8.687 ± 0.042

2.101 ± 0.024

4.692 ± 0.033

2.543 ± 0.036

9.767 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.135 ± 0.02

2.535 ± 0.029

5.138 ± 0.035

3.109 ± 0.027

6.726 ± 0.053

5.948 ± 0.035

6.219 ± 0.031

8.366 ± 0.04

1.408 ± 0.02

2.125 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski