Lachnobacterium bovis DSM 14045

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Lachnobacterium; Lachnobacterium bovis

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2391 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3F6N5|A0A1H3F6N5_9FIRM Methylglyoxal synthase OS=Lachnobacterium bovis DSM 14045 OX=1122142 GN=mgsA PE=3 SV=1
MM1 pKa = 7.59EE2 pKa = 5.94EE3 pKa = 3.69ITRR6 pKa = 11.84KK7 pKa = 9.46EE8 pKa = 3.68VWFGYY13 pKa = 10.7DD14 pKa = 3.82DD15 pKa = 5.76LEE17 pKa = 4.42TTEE20 pKa = 5.19DD21 pKa = 3.84SITIEE26 pKa = 4.22FPNVSGMGWKK36 pKa = 10.23SYY38 pKa = 8.02DD39 pKa = 3.3HH40 pKa = 6.87KK41 pKa = 10.63HH42 pKa = 4.33QQEE45 pKa = 3.97YY46 pKa = 10.53DD47 pKa = 3.37VNYY50 pKa = 10.59EE51 pKa = 3.78MTTNHH56 pKa = 7.07PFPPSWLEE64 pKa = 3.53IVDD67 pKa = 3.72YY68 pKa = 11.48SNLEE72 pKa = 4.04PYY74 pKa = 9.87IDD76 pKa = 5.35EE77 pKa = 5.04PDD79 pKa = 3.86CLPNFTFSYY88 pKa = 9.94EE89 pKa = 4.09GDD91 pKa = 3.56VVTLRR96 pKa = 11.84EE97 pKa = 3.97FMKK100 pKa = 10.4KK101 pKa = 9.63YY102 pKa = 10.71VFGGLISEE110 pKa = 5.42ADD112 pKa = 3.75QEE114 pKa = 4.48DD115 pKa = 3.82PSYY118 pKa = 11.06WEE120 pKa = 4.35DD121 pKa = 3.07

Molecular weight: 14.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H3MA54|A0A1H3MA54_9FIRM Uncharacterized protein OS=Lachnobacterium bovis DSM 14045 OX=1122142 GN=SAMN02910414_02253 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.95KK9 pKa = 7.58RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.07VHH16 pKa = 5.95GFRR19 pKa = 11.84KK20 pKa = 9.97RR21 pKa = 11.84MSTASGRR28 pKa = 11.84KK29 pKa = 8.42VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.61GRR39 pKa = 11.84KK40 pKa = 8.87KK41 pKa = 10.59LSAA44 pKa = 3.95

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2391

0

2391

786201

39

5296

328.8

37.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.103 ± 0.053

1.364 ± 0.019

5.988 ± 0.046

7.393 ± 0.059

4.388 ± 0.041

6.14 ± 0.055

1.477 ± 0.021

8.677 ± 0.055

9.077 ± 0.055

8.374 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.793 ± 0.025

5.938 ± 0.045

2.701 ± 0.027

2.823 ± 0.026

3.533 ± 0.029

6.187 ± 0.041

5.065 ± 0.038

6.941 ± 0.036

0.691 ± 0.015

4.346 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski