Confluentimicrobium lipolyticum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Actibacterium

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3757 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A238JND1|A0A238JND1_9RHOB Uncharacterized protein OS=Confluentimicrobium lipolyticum OX=1524263 GN=COL8621_00576 PE=4 SV=1
MM1 pKa = 7.64KK2 pKa = 10.06PLLTLAATAVTALFAQPAAALEE24 pKa = 4.28LNGGEE29 pKa = 4.22VQLGYY34 pKa = 9.19STFPEE39 pKa = 4.18EE40 pKa = 4.05TDD42 pKa = 3.4LSRR45 pKa = 11.84TALQGSVEE53 pKa = 3.95IGFTQKK59 pKa = 10.26FAAQLDD65 pKa = 4.03LSHH68 pKa = 7.35FNFDD72 pKa = 3.82FANEE76 pKa = 4.15DD77 pKa = 3.64GQNVTLHH84 pKa = 7.05AIYY87 pKa = 10.64NVGPVVSVGAFYY99 pKa = 11.03GMDD102 pKa = 3.18KK103 pKa = 11.03VADD106 pKa = 4.18ADD108 pKa = 4.03LDD110 pKa = 4.23FYY112 pKa = 11.3GIEE115 pKa = 4.79GGSQTQVFDD124 pKa = 3.53TEE126 pKa = 4.92AYY128 pKa = 10.25LGYY131 pKa = 10.56LDD133 pKa = 5.01GDD135 pKa = 3.64NDD137 pKa = 3.85GTLVGLYY144 pKa = 10.65GRR146 pKa = 11.84FAVSEE151 pKa = 3.98NWGLSASYY159 pKa = 10.85DD160 pKa = 3.57LADD163 pKa = 3.87IDD165 pKa = 4.33GGSDD169 pKa = 3.16VSRR172 pKa = 11.84YY173 pKa = 10.5AFTVDD178 pKa = 2.85YY179 pKa = 11.17RR180 pKa = 11.84MAQGIEE186 pKa = 4.05LFGQVGSVEE195 pKa = 4.14IGDD198 pKa = 3.88DD199 pKa = 3.35AEE201 pKa = 5.13AYY203 pKa = 10.28VGIGAKK209 pKa = 10.04YY210 pKa = 10.29RR211 pKa = 11.84FGADD215 pKa = 2.76GGVTFGRR222 pKa = 11.84RR223 pKa = 11.84GFLEE227 pKa = 4.21QIPGLL232 pKa = 3.92

Molecular weight: 24.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A238JLE2|A0A238JLE2_9RHOB Tryptophan synthase beta chain OS=Confluentimicrobium lipolyticum OX=1524263 GN=trpB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.03GRR39 pKa = 11.84KK40 pKa = 8.43SLCAA44 pKa = 3.75

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3757

0

3757

1183618

30

2751

315.0

34.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.903 ± 0.052

0.894 ± 0.013

6.093 ± 0.036

6.032 ± 0.039

3.933 ± 0.024

8.509 ± 0.035

2.021 ± 0.019

5.289 ± 0.027

3.64 ± 0.033

9.891 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.763 ± 0.018

2.88 ± 0.023

4.915 ± 0.025

3.209 ± 0.02

6.159 ± 0.036

5.296 ± 0.027

5.575 ± 0.027

7.388 ± 0.033

1.355 ± 0.018

2.255 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski