Guangdong greater green snake arterivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Arnidovirineae; Gresnaviridae; Reternivirinae; Cyclophivirus; Ptyasnivirus 1

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1GMY2|A0A2P1GMY2_9NIDO Uncharacterized protein OS=Guangdong greater green snake arterivirus OX=2116442 PE=4 SV=1
MM1 pKa = 6.7WRR3 pKa = 11.84CMGSYY8 pKa = 10.5AHH10 pKa = 7.07DD11 pKa = 3.69LVVAEE16 pKa = 5.17SIVSYY21 pKa = 9.73QLEE24 pKa = 4.61VEE26 pKa = 4.83CFAGPCKK33 pKa = 10.22NACFACAINPSLDD46 pKa = 3.3LSLKK50 pKa = 10.57VFILLTNQICHH61 pKa = 4.96SHH63 pKa = 5.52VVHH66 pKa = 6.81SDD68 pKa = 2.71VGLAHH73 pKa = 7.11ASDD76 pKa = 4.46LGVVTAVSHH85 pKa = 7.1ADD87 pKa = 3.46LPKK90 pKa = 9.97VDD92 pKa = 3.88VSNAHH97 pKa = 5.78EE98 pKa = 3.92WSTFKK103 pKa = 10.7RR104 pKa = 11.84VALVIAVIGNVDD116 pKa = 3.27QCQPATVWSFNFTTCCEE133 pKa = 3.75INYY136 pKa = 8.41PFQAHH141 pKa = 5.76LRR143 pKa = 11.84VMLVMVHH150 pKa = 6.53

Molecular weight: 16.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1GMV4|A0A2P1GMV4_9NIDO Non-structural protein 6 OS=Guangdong greater green snake arterivirus OX=2116442 PE=4 SV=1
MM1 pKa = 6.96SQPRR5 pKa = 11.84GAQRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84SGSRR15 pKa = 11.84QRR17 pKa = 11.84SGSRR21 pKa = 11.84NRR23 pKa = 11.84SQSRR27 pKa = 11.84GPPQGRR33 pKa = 11.84RR34 pKa = 11.84QQRR37 pKa = 11.84PRR39 pKa = 11.84VVYY42 pKa = 9.42VQARR46 pKa = 11.84SAGNSRR52 pKa = 11.84NRR54 pKa = 11.84QRR56 pKa = 11.84GPVSASDD63 pKa = 3.05RR64 pKa = 11.84VEE66 pKa = 4.18FQLHH70 pKa = 5.69NLLRR74 pKa = 11.84DD75 pKa = 3.54QLSISSSSPGDD86 pKa = 3.53ARR88 pKa = 11.84HH89 pKa = 6.28GPLGKK94 pKa = 10.06AKK96 pKa = 10.2PMAALCLNIAKK107 pKa = 10.34SLVHH111 pKa = 5.03GHH113 pKa = 5.63GVIIAKK119 pKa = 9.94PGTNEE124 pKa = 3.51VTVTVTVKK132 pKa = 10.89SPVVLSTQSGSSNPAALEE150 pKa = 4.19KK151 pKa = 10.97GCTTAAVSMM160 pKa = 4.68

Molecular weight: 17.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

5762

150

4326

1152.4

128.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.855 ± 0.439

3.297 ± 0.289

5.224 ± 0.581

4.009 ± 0.48

5.276 ± 0.417

5.484 ± 0.697

3.072 ± 0.506

4.894 ± 0.314

5.137 ± 0.639

9.719 ± 0.636

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.048 ± 0.316

4.148 ± 0.348

5.988 ± 0.816

3.297 ± 0.363

4.217 ± 0.601

8.573 ± 0.528

6.838 ± 0.409

6.473 ± 0.679

1.874 ± 0.141

3.575 ± 0.408
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski