Lactobacillus tucceti DSM 20183

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Companilactobacillus; Companilactobacillus tucceti

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2050 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R1J1X3|A0A0R1J1X3_9LACO Iron(III)-compound ABC transporter permease OS=Lactobacillus tucceti DSM 20183 OX=1423811 GN=FC72_GL001387 PE=3 SV=1
MM1 pKa = 7.17TKK3 pKa = 10.51VKK5 pKa = 9.98IVYY8 pKa = 10.36ASITGNDD15 pKa = 2.9EE16 pKa = 4.44DD17 pKa = 3.41IAYY20 pKa = 10.67VLTEE24 pKa = 3.89KK25 pKa = 11.08FEE27 pKa = 4.84DD28 pKa = 3.49LGADD32 pKa = 3.44VEE34 pKa = 4.36MSEE37 pKa = 5.47ISQTDD42 pKa = 3.07AADD45 pKa = 4.2FEE47 pKa = 4.94DD48 pKa = 5.84ADD50 pKa = 3.65ICVIASYY57 pKa = 9.52TYY59 pKa = 10.7DD60 pKa = 3.21QGIVPDD66 pKa = 3.95EE67 pKa = 4.32ALDD70 pKa = 4.11FYY72 pKa = 11.53EE73 pKa = 6.13DD74 pKa = 3.86MQDD77 pKa = 3.45LDD79 pKa = 5.06LDD81 pKa = 3.94GKK83 pKa = 11.41VYY85 pKa = 8.16GTCGSGDD92 pKa = 3.64TFYY95 pKa = 11.36EE96 pKa = 4.78DD97 pKa = 3.17YY98 pKa = 10.94CRR100 pKa = 11.84AVDD103 pKa = 3.56EE104 pKa = 4.6FAAIFEE110 pKa = 4.52QVGATKK116 pKa = 10.08GAEE119 pKa = 3.95PVRR122 pKa = 11.84VEE124 pKa = 4.85LEE126 pKa = 4.12PEE128 pKa = 4.02QEE130 pKa = 5.65DD131 pKa = 4.49IDD133 pKa = 4.4HH134 pKa = 7.3LDD136 pKa = 3.4NFAEE140 pKa = 4.16EE141 pKa = 4.48LVGKK145 pKa = 10.06AKK147 pKa = 10.61EE148 pKa = 3.94MDD150 pKa = 3.44HH151 pKa = 7.0

Molecular weight: 16.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R1IZ81|A0A0R1IZ81_9LACO Uncharacterized protein OS=Lactobacillus tucceti DSM 20183 OX=1423811 GN=FC72_GL002029 PE=4 SV=1
MM1 pKa = 5.72TTKK4 pKa = 9.85RR5 pKa = 11.84TFQPKK10 pKa = 8.33KK11 pKa = 7.5RR12 pKa = 11.84HH13 pKa = 5.56RR14 pKa = 11.84EE15 pKa = 3.79RR16 pKa = 11.84VHH18 pKa = 7.7GFMKK22 pKa = 10.54RR23 pKa = 11.84MSTSNGRR30 pKa = 11.84KK31 pKa = 8.4VLARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.2KK39 pKa = 10.05GRR41 pKa = 11.84KK42 pKa = 8.66VLSAA46 pKa = 4.05

Molecular weight: 5.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2050

0

2050

631509

46

2417

308.1

34.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.436 ± 0.061

0.457 ± 0.012

6.443 ± 0.058

5.693 ± 0.064

4.453 ± 0.045

6.585 ± 0.051

1.752 ± 0.025

8.188 ± 0.056

7.668 ± 0.053

9.294 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.729 ± 0.028

5.901 ± 0.049

3.326 ± 0.029

3.505 ± 0.035

3.332 ± 0.042

6.812 ± 0.055

5.898 ± 0.057

6.879 ± 0.047

0.915 ± 0.019

3.729 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski