Corynebacterium cystitidis DSM 20524

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium cystitidis

Average proteome isoelectric point is 5.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2787 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9VG85|A0A1H9VG85_9CORY Long-chain acyl-CoA synthetase OS=Corynebacterium cystitidis DSM 20524 OX=1121357 GN=SAMN05661109_02227 PE=4 SV=1
MM1 pKa = 7.72SDD3 pKa = 3.64DD4 pKa = 3.89TSCDD8 pKa = 2.97GLQFNRR14 pKa = 11.84TPVYY18 pKa = 9.83ISLAIAIVLVVAVLFGAKK36 pKa = 8.62WYY38 pKa = 10.42FDD40 pKa = 3.55QATNTPVAMGAVDD53 pKa = 4.5APEE56 pKa = 4.72ADD58 pKa = 3.76SPQCQSLIDD67 pKa = 4.44DD68 pKa = 5.14LPDD71 pKa = 3.35EE72 pKa = 4.8LLGHH76 pKa = 6.93DD77 pKa = 3.74RR78 pKa = 11.84AEE80 pKa = 4.14LTEE83 pKa = 4.33PKK85 pKa = 9.9PAGAAAWQTTEE96 pKa = 3.85IEE98 pKa = 4.8RR99 pKa = 11.84ITLRR103 pKa = 11.84CGVAVPLQYY112 pKa = 10.83DD113 pKa = 4.39EE114 pKa = 4.53YY115 pKa = 11.37AQTEE119 pKa = 4.32QINGVEE125 pKa = 4.22WLRR128 pKa = 11.84VDD130 pKa = 4.97DD131 pKa = 4.18YY132 pKa = 11.28TPEE135 pKa = 4.24STLSTWYY142 pKa = 9.29TVDD145 pKa = 3.59RR146 pKa = 11.84YY147 pKa = 10.23PVVAVTADD155 pKa = 3.36DD156 pKa = 4.02HH157 pKa = 7.24ALGGAEE163 pKa = 3.83NPVEE167 pKa = 4.05NVPVGQLEE175 pKa = 4.02QRR177 pKa = 11.84EE178 pKa = 4.41VEE180 pKa = 4.73PYY182 pKa = 8.92PAPLSNLAAGDD193 pKa = 3.68ASVAGACATLMEE205 pKa = 4.82TLPEE209 pKa = 4.3DD210 pKa = 3.69VADD213 pKa = 5.0GYY215 pKa = 11.7SPLAANTGGAEE226 pKa = 4.38LDD228 pKa = 3.69PDD230 pKa = 4.19TAVWTAPGAEE240 pKa = 4.32SIVLRR245 pKa = 11.84CGVADD250 pKa = 3.91PEE252 pKa = 4.26NYY254 pKa = 9.58QPGEE258 pKa = 3.89QLHH261 pKa = 6.06QINDD265 pKa = 3.64VTWFEE270 pKa = 4.16DD271 pKa = 3.48TQLINGSTASTWFALGRR288 pKa = 11.84EE289 pKa = 4.41ANVAVSMPQFVGNSAIVRR307 pKa = 11.84ITEE310 pKa = 4.75AIEE313 pKa = 3.86KK314 pKa = 10.07ALPAEE319 pKa = 4.32

Molecular weight: 34.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9UMT5|A0A1H9UMT5_9CORY Non-specific serine/threonine protein kinase OS=Corynebacterium cystitidis DSM 20524 OX=1121357 GN=SAMN05661109_01882 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84KK16 pKa = 8.53HH17 pKa = 4.82GFRR20 pKa = 11.84TRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVSARR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.64KK38 pKa = 10.52GRR40 pKa = 11.84AKK42 pKa = 9.67LTAA45 pKa = 4.21

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2787

0

2787

873279

19

3087

313.3

34.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.083 ± 0.055

0.655 ± 0.011

6.262 ± 0.042

6.262 ± 0.046

3.357 ± 0.031

8.207 ± 0.043

2.237 ± 0.021

5.162 ± 0.035

3.182 ± 0.036

9.375 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.02

3.044 ± 0.025

5.008 ± 0.034

3.492 ± 0.024

6.019 ± 0.04

5.88 ± 0.037

6.367 ± 0.034

8.332 ± 0.041

1.454 ± 0.02

2.368 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski