Yersinia phage fHe-Yen9-04

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Eneladusvirus; Yersinia virus Yen9-04

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 531 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2C9CXZ4|A0A2C9CXZ4_9CAUD Uncharacterized protein OS=Yersinia phage fHe-Yen9-04 OX=2052742 GN=g369 PE=4 SV=1
MM1 pKa = 6.77NQNYY5 pKa = 8.09MMPYY9 pKa = 8.04QGKK12 pKa = 7.75TIAEE16 pKa = 4.1EE17 pKa = 4.38SIEE20 pKa = 3.95LAQTFVDD27 pKa = 3.64HH28 pKa = 7.16FKK30 pKa = 11.38DD31 pKa = 3.45KK32 pKa = 11.17FDD34 pKa = 4.66FSPHH38 pKa = 5.55IDD40 pKa = 4.08KK41 pKa = 10.66IAEE44 pKa = 4.6DD45 pKa = 3.32IEE47 pKa = 4.96NYY49 pKa = 9.94VFSGNWDD56 pKa = 3.18HH57 pKa = 6.65TIEE60 pKa = 4.24VEE62 pKa = 4.04VDD64 pKa = 3.48GVPWIRR70 pKa = 11.84VIQEE74 pKa = 3.97DD75 pKa = 5.17EE76 pKa = 4.3YY77 pKa = 10.77DD78 pKa = 3.3QHH80 pKa = 7.47MDD82 pKa = 3.54EE83 pKa = 5.6DD84 pKa = 4.64DD85 pKa = 4.65EE86 pKa = 4.5EE87 pKa = 4.71TPSNDD92 pKa = 3.02DD93 pKa = 2.64VDD95 pKa = 4.49YY96 pKa = 11.32VGGYY100 pKa = 10.44YY101 pKa = 11.18VMLVNN106 pKa = 5.49

Molecular weight: 12.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2C9CWZ0|A0A2C9CWZ0_9CAUD tRNAHis-5'-guanylyltransferase OS=Yersinia phage fHe-Yen9-04 OX=2052742 GN=g142 PE=4 SV=1
MM1 pKa = 6.54WQCIKK6 pKa = 10.35PRR8 pKa = 11.84PLYY11 pKa = 9.38RR12 pKa = 11.84TAIEE16 pKa = 4.07RR17 pKa = 11.84NRR19 pKa = 11.84TTRR22 pKa = 11.84FHH24 pKa = 7.06SFIEE28 pKa = 3.93IRR30 pKa = 11.84DD31 pKa = 3.77MKK33 pKa = 10.73LLRR36 pKa = 11.84LSSSVFLPTRR46 pKa = 11.84WGDD49 pKa = 3.53EE50 pKa = 3.93NTLTNLVSIINRR62 pKa = 11.84STIQYY67 pKa = 9.11YY68 pKa = 10.32INN70 pKa = 3.58

Molecular weight: 8.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

531

0

531

107596

23

3339

202.6

23.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.843 ± 0.154

1.157 ± 0.054

6.501 ± 0.12

6.801 ± 0.173

4.576 ± 0.096

5.678 ± 0.168

1.905 ± 0.065

7.99 ± 0.137

6.696 ± 0.164

8.009 ± 0.09

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.687 ± 0.067

6.93 ± 0.123

3.051 ± 0.063

3.461 ± 0.082

3.708 ± 0.087

7.148 ± 0.138

6.483 ± 0.274

6.37 ± 0.102

1.128 ± 0.049

4.877 ± 0.125
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski