Ceratobasidium theobromae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Cantharellales; Ceratobasidiaceae; Ceratobasidium

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9256 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5N5QEB7|A0A5N5QEB7_9AGAM Mitogen-activated protein kinase OS=Ceratobasidium theobromae OX=1582974 GN=CTheo_6759 PE=3 SV=1
MM1 pKa = 7.58GISYY5 pKa = 10.41YY6 pKa = 10.78DD7 pKa = 3.7EE8 pKa = 5.76IEE10 pKa = 4.5IEE12 pKa = 4.19DD13 pKa = 4.18MVWDD17 pKa = 3.77EE18 pKa = 4.4AKK20 pKa = 10.17RR21 pKa = 11.84VYY23 pKa = 10.17HH24 pKa = 5.7YY25 pKa = 8.21PCPCGDD31 pKa = 3.19RR32 pKa = 11.84FEE34 pKa = 4.61ISRR37 pKa = 11.84EE38 pKa = 3.64QLANYY43 pKa = 9.4EE44 pKa = 4.92DD45 pKa = 4.61IATCPSCSLIIRR57 pKa = 11.84VIYY60 pKa = 10.39DD61 pKa = 3.4PLDD64 pKa = 4.11FEE66 pKa = 6.0DD67 pKa = 5.03EE68 pKa = 4.59EE69 pKa = 5.4PDD71 pKa = 4.08EE72 pKa = 5.69DD73 pKa = 5.0DD74 pKa = 4.56PDD76 pKa = 5.77PIEE79 pKa = 4.48EE80 pKa = 4.37EE81 pKa = 4.23EE82 pKa = 4.94SSGSDD87 pKa = 4.04DD88 pKa = 4.36GGKK91 pKa = 9.71EE92 pKa = 3.62ADD94 pKa = 3.43KK95 pKa = 11.03VQNAMEE101 pKa = 4.11NLALNEE107 pKa = 3.96EE108 pKa = 4.48PLAVTLVEE116 pKa = 4.43TRR118 pKa = 11.84AA119 pKa = 3.38

Molecular weight: 13.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5N5QQ55|A0A5N5QQ55_9AGAM G protein coupled receptor OS=Ceratobasidium theobromae OX=1582974 GN=CTheo_3289 PE=4 SV=1
MM1 pKa = 7.36SLSPPQPLRR10 pKa = 11.84ARR12 pKa = 11.84ASSIVQPLTIDD23 pKa = 3.26SLRR26 pKa = 11.84RR27 pKa = 11.84TTGLATPPASPFSSVFTRR45 pKa = 11.84PPRR48 pKa = 11.84QHH50 pKa = 6.7LPSPALSRR58 pKa = 11.84TPSPPPRR65 pKa = 11.84EE66 pKa = 3.51THH68 pKa = 6.73APVLRR73 pKa = 11.84LAAGFALSAVPILMALSTLPVALRR97 pKa = 11.84MPRR100 pKa = 11.84TLADD104 pKa = 3.04IALLGRR110 pKa = 11.84DD111 pKa = 3.77LKK113 pKa = 11.13AYY115 pKa = 9.14AASAPGMAHH124 pKa = 6.15VMAVMCCLAVWEE136 pKa = 4.92HH137 pKa = 6.2AWSIPGSVVLNVLAGALVSPLWATLLMTLLTSLGSLAASLLAAPLEE183 pKa = 4.75PIVQRR188 pKa = 11.84IAPKK192 pKa = 10.49ALDD195 pKa = 3.68VVASALQGDD204 pKa = 3.8PRR206 pKa = 11.84AAKK209 pKa = 7.9RR210 pKa = 11.84TPTWVRR216 pKa = 11.84IVVMRR221 pKa = 11.84LVGVVPWSAINIACGVCRR239 pKa = 11.84VPFVDD244 pKa = 3.98CAIGAFIGALPWTAVTCQTLALGSSSDD271 pKa = 3.63PKK273 pKa = 10.41TLSSLLSSPAIILKK287 pKa = 10.36LVLLSLLSLGPVLCRR302 pKa = 11.84DD303 pKa = 3.71KK304 pKa = 11.19LTDD307 pKa = 3.63ALAATDD313 pKa = 4.23EE314 pKa = 4.39KK315 pKa = 11.46APLAPAPMWKK325 pKa = 8.53VWHH328 pKa = 6.24WRR330 pKa = 11.84RR331 pKa = 11.84SSHH334 pKa = 5.99GLPRR338 pKa = 11.84PKK340 pKa = 10.47SPEE343 pKa = 3.61RR344 pKa = 11.84TMEE347 pKa = 3.9EE348 pKa = 4.04VLDD351 pKa = 4.18EE352 pKa = 4.17NLIFAMSPHH361 pKa = 7.02ANHH364 pKa = 5.57VMYY367 pKa = 9.99PVLLFCSGGIQSSSLVYY384 pKa = 10.57NYY386 pKa = 10.2LIQFGLGRR394 pKa = 11.84LEE396 pKa = 4.64PGPLGIPRR404 pKa = 11.84STHH407 pKa = 6.24PNTGRR412 pKa = 11.84HH413 pKa = 5.09PAYY416 pKa = 10.25ALSQFSFQHH425 pKa = 5.85PPVRR429 pKa = 11.84PHH431 pKa = 6.82LARR434 pKa = 11.84RR435 pKa = 11.84SHH437 pKa = 6.91FDD439 pKa = 3.06VTRR442 pKa = 11.84TTWLAYY448 pKa = 9.54KK449 pKa = 10.01FASKK453 pKa = 10.53GPHH456 pKa = 6.33IFLCPASAPRR466 pKa = 11.84VSRR469 pKa = 11.84PSLRR473 pKa = 3.52

Molecular weight: 50.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9256

0

9256

5421178

66

6167

585.7

64.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.943 ± 0.021

1.234 ± 0.008

5.418 ± 0.016

5.688 ± 0.025

3.501 ± 0.014

6.899 ± 0.025

2.513 ± 0.01

4.944 ± 0.016

4.322 ± 0.02

8.998 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.027 ± 0.009

3.502 ± 0.013

6.807 ± 0.031

3.735 ± 0.013

6.29 ± 0.021

8.668 ± 0.027

6.181 ± 0.016

6.337 ± 0.015

1.466 ± 0.009

2.53 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski