Lamium leaf distortion virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B2CXY5|B2CXY5_9VIRU Aspartic protease OS=Lamium leaf distortion virus OX=515320 PE=3 SV=1
MM1 pKa = 7.49SFYY4 pKa = 11.2EE5 pKa = 5.51LIDD8 pKa = 3.46KK9 pKa = 8.65QFWEE13 pKa = 4.23TLEE16 pKa = 4.31TQSEE20 pKa = 4.11LDD22 pKa = 3.36EE23 pKa = 4.51RR24 pKa = 11.84LNTLSRR30 pKa = 11.84LVNQGEE36 pKa = 4.11QATNEE41 pKa = 3.95EE42 pKa = 4.27LQGNEE47 pKa = 3.91TLRR50 pKa = 11.84SFLNLDD56 pKa = 4.04NICEE60 pKa = 4.09RR61 pKa = 11.84FEE63 pKa = 4.03TLNVIEE69 pKa = 4.93EE70 pKa = 4.22SSEE73 pKa = 4.28DD74 pKa = 3.88SSIDD78 pKa = 3.3NNDD81 pKa = 3.36PVDD84 pKa = 3.88YY85 pKa = 10.39SDD87 pKa = 4.02SSSEE91 pKa = 4.17EE92 pKa = 3.94EE93 pKa = 3.95EE94 pKa = 4.03QNTNKK99 pKa = 10.09RR100 pKa = 11.84FFMEE104 pKa = 4.46KK105 pKa = 10.87GEE107 pKa = 4.2GSQNKK112 pKa = 9.0KK113 pKa = 10.82DD114 pKa = 3.72KK115 pKa = 10.44DD116 pKa = 3.75PKK118 pKa = 10.01VEE120 pKa = 4.03YY121 pKa = 10.17PNVEE125 pKa = 4.0NLQSEE130 pKa = 4.75DD131 pKa = 3.25NRR133 pKa = 11.84RR134 pKa = 11.84TPFNNNKK141 pKa = 9.69RR142 pKa = 11.84KK143 pKa = 10.12SPEE146 pKa = 3.52QARR149 pKa = 11.84YY150 pKa = 7.61PVKK153 pKa = 10.48PKK155 pKa = 10.65FEE157 pKa = 4.41VVSRR161 pKa = 11.84TLGFLDD167 pKa = 4.79IDD169 pKa = 4.34CQDD172 pKa = 3.3HH173 pKa = 5.91EE174 pKa = 4.56VRR176 pKa = 11.84KK177 pKa = 10.55KK178 pKa = 10.85NIDD181 pKa = 2.9AWASEE186 pKa = 4.15LSLIVQTNPDD196 pKa = 3.57AYY198 pKa = 10.62DD199 pKa = 3.51NADD202 pKa = 3.46AVILLAEE209 pKa = 4.68HH210 pKa = 6.86KK211 pKa = 10.79ALGNAKK217 pKa = 9.57EE218 pKa = 4.47LIKK221 pKa = 10.16GTYY224 pKa = 7.33WNKK227 pKa = 10.65DD228 pKa = 3.47NPPMYY233 pKa = 9.66MLNQIFDD240 pKa = 3.79SLYY243 pKa = 11.34SMFLGLDD250 pKa = 3.35YY251 pKa = 11.16TDD253 pKa = 5.61AISKK257 pKa = 10.29LLEE260 pKa = 3.94TNKK263 pKa = 9.97QKK265 pKa = 11.01EE266 pKa = 4.02NARR269 pKa = 11.84IRR271 pKa = 11.84LANLKK276 pKa = 9.81LCNICSIDD284 pKa = 3.87EE285 pKa = 4.29FNCAYY290 pKa = 10.18EE291 pKa = 4.22EE292 pKa = 4.26EE293 pKa = 4.42FFKK296 pKa = 11.18LNQNEE301 pKa = 4.15YY302 pKa = 9.46PKK304 pKa = 10.9YY305 pKa = 10.27ISDD308 pKa = 4.33YY309 pKa = 9.85LLKK312 pKa = 10.53IPVVGLAAKK321 pKa = 10.13EE322 pKa = 4.28KK323 pKa = 10.13FDD325 pKa = 3.76KK326 pKa = 8.95TTGTLAYY333 pKa = 10.4SIGHH337 pKa = 6.0AEE339 pKa = 3.82KK340 pKa = 10.54LVRR343 pKa = 11.84EE344 pKa = 4.85EE345 pKa = 3.53ITKK348 pKa = 9.89ICEE351 pKa = 3.98LSQQQKK357 pKa = 10.19KK358 pKa = 9.82LKK360 pKa = 10.15KK361 pKa = 9.84ISKK364 pKa = 9.14KK365 pKa = 10.05CCNKK369 pKa = 9.77IANKK373 pKa = 8.93STDD376 pKa = 2.95IGCYY380 pKa = 5.09TTKK383 pKa = 10.43SYY385 pKa = 11.09KK386 pKa = 9.89KK387 pKa = 9.91KK388 pKa = 10.17KK389 pKa = 9.02KK390 pKa = 10.17KK391 pKa = 10.08KK392 pKa = 7.41FKK394 pKa = 10.49KK395 pKa = 10.03YY396 pKa = 10.13VFSKK400 pKa = 10.49RR401 pKa = 11.84KK402 pKa = 8.95RR403 pKa = 11.84KK404 pKa = 9.58KK405 pKa = 9.9FRR407 pKa = 11.84PGKK410 pKa = 9.67YY411 pKa = 8.43FQKK414 pKa = 10.77KK415 pKa = 9.12KK416 pKa = 10.61FPTSGEE422 pKa = 4.19GKK424 pKa = 10.14KK425 pKa = 9.89PCPKK429 pKa = 10.55GKK431 pKa = 8.6TNCRR435 pKa = 11.84CWICNVEE442 pKa = 3.6GHH444 pKa = 6.06YY445 pKa = 11.17ANKK448 pKa = 10.24CPNKK452 pKa = 9.64QKK454 pKa = 10.78YY455 pKa = 8.2GEE457 pKa = 4.21KK458 pKa = 10.6VKK460 pKa = 10.47ILRR463 pKa = 11.84KK464 pKa = 9.74ADD466 pKa = 3.76LQDD469 pKa = 3.97LEE471 pKa = 4.8PIEE474 pKa = 5.77DD475 pKa = 3.55IFEE478 pKa = 4.37EE479 pKa = 4.31SLDD482 pKa = 3.72VYY484 pKa = 10.18IAEE487 pKa = 4.92IIEE490 pKa = 4.08FDD492 pKa = 3.94PDD494 pKa = 3.24LSYY497 pKa = 11.34QEE499 pKa = 5.15SSDD502 pKa = 3.74EE503 pKa = 4.15SSEE506 pKa = 4.15EE507 pKa = 3.82SDD509 pKa = 3.38

Molecular weight: 59.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B2CXY3|B2CXY3_9VIRU Protein 3 OS=Lamium leaf distortion virus OX=515320 PE=3 SV=1
MM1 pKa = 7.6SITSKK6 pKa = 10.2SHH8 pKa = 5.85IYY10 pKa = 10.44KK11 pKa = 10.38KK12 pKa = 10.03GTTIIPLKK20 pKa = 10.49NLAINTDD27 pKa = 2.98GKK29 pKa = 11.11KK30 pKa = 10.32YY31 pKa = 10.72VFNSLKK37 pKa = 10.62PNIQSVVNHH46 pKa = 6.23CNNLNEE52 pKa = 4.13VCGRR56 pKa = 11.84ILLGIWKK63 pKa = 8.92LCSYY67 pKa = 10.58FGLSKK72 pKa = 10.9DD73 pKa = 3.27PSEE76 pKa = 4.14PHH78 pKa = 6.15SKK80 pKa = 10.46NPSVYY85 pKa = 10.7DD86 pKa = 3.41HH87 pKa = 7.27AKK89 pKa = 10.03TIFKK93 pKa = 10.62SGGVDD98 pKa = 2.85HH99 pKa = 6.9SVILRR104 pKa = 11.84EE105 pKa = 3.91IKK107 pKa = 10.64SLIEE111 pKa = 3.81TQQTKK116 pKa = 10.53NKK118 pKa = 9.77NLEE121 pKa = 4.02NKK123 pKa = 9.49IDD125 pKa = 3.86NLEE128 pKa = 4.03KK129 pKa = 10.59SIKK132 pKa = 10.06DD133 pKa = 3.41LSHH136 pKa = 7.11KK137 pKa = 10.31IEE139 pKa = 4.67PEE141 pKa = 3.81PLTHH145 pKa = 6.97EE146 pKa = 4.66KK147 pKa = 10.45IKK149 pKa = 11.05DD150 pKa = 3.39FSNALKK156 pKa = 10.81AIDD159 pKa = 4.99DD160 pKa = 3.84KK161 pKa = 11.42LKK163 pKa = 11.15NVIGEE168 pKa = 4.08

Molecular weight: 18.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2335

122

696

389.2

44.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.411 ± 0.242

1.97 ± 0.261

5.396 ± 0.432

7.923 ± 0.726

4.368 ± 0.306

3.94 ± 0.22

2.184 ± 0.401

7.666 ± 0.811

11.221 ± 0.673

8.822 ± 0.282

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.627 ± 0.274

6.51 ± 0.859

4.411 ± 0.66

4.069 ± 0.3

3.683 ± 0.402

8.223 ± 0.834

4.668 ± 0.172

4.668 ± 0.35

0.857 ± 0.172

3.383 ± 0.262
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski