Granulicatella elegans ATCC 700633

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella elegans

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1562 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D0BLH7|D0BLH7_9LACT Uncharacterized protein OS=Granulicatella elegans ATCC 700633 OX=626369 GN=HMPREF0446_00812 PE=4 SV=1
MM1 pKa = 6.94ATALIVYY8 pKa = 10.13ASLTGNTEE16 pKa = 3.95EE17 pKa = 4.84IADD20 pKa = 3.75ILAEE24 pKa = 4.04SLEE27 pKa = 4.28EE28 pKa = 3.88QGVEE32 pKa = 4.05VDD34 pKa = 3.87IKK36 pKa = 10.61EE37 pKa = 4.49CTSATADD44 pKa = 3.49EE45 pKa = 4.25FHH47 pKa = 7.76DD48 pKa = 3.84YY49 pKa = 10.51DD50 pKa = 3.54ICVVATYY57 pKa = 9.26TYY59 pKa = 9.74GTDD62 pKa = 3.34GDD64 pKa = 4.46LPDD67 pKa = 5.25EE68 pKa = 4.33IVDD71 pKa = 4.41FYY73 pKa = 11.84EE74 pKa = 4.07EE75 pKa = 4.79LEE77 pKa = 4.2EE78 pKa = 4.49EE79 pKa = 4.33DD80 pKa = 4.75LSGKK84 pKa = 10.11IYY86 pKa = 10.59GALGSGDD93 pKa = 3.3TFYY96 pKa = 11.52DD97 pKa = 3.66KK98 pKa = 10.96FCQSVLDD105 pKa = 4.14FDD107 pKa = 4.05EE108 pKa = 5.18QFAKK112 pKa = 10.21TGATKK117 pKa = 10.33GAEE120 pKa = 3.94NVLVDD125 pKa = 4.98LNAEE129 pKa = 4.08EE130 pKa = 4.65EE131 pKa = 4.22DD132 pKa = 3.87VKK134 pKa = 11.35NIEE137 pKa = 4.36AFAKK141 pKa = 10.62SLVEE145 pKa = 4.06KK146 pKa = 10.93LGG148 pKa = 3.49

Molecular weight: 16.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D0BMB0|D0BMB0_9LACT Beta sliding clamp OS=Granulicatella elegans ATCC 700633 OX=626369 GN=HMPREF0446_00833 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 9.16RR10 pKa = 11.84KK11 pKa = 9.12RR12 pKa = 11.84QKK14 pKa = 9.38VHH16 pKa = 5.8GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 9.46NGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.8GRR39 pKa = 11.84KK40 pKa = 8.76VLAAA44 pKa = 4.31

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1562

0

1562

504669

32

2889

323.1

36.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.795 ± 0.093

0.652 ± 0.02

5.032 ± 0.057

7.917 ± 0.067

4.476 ± 0.065

6.447 ± 0.077

1.956 ± 0.036

7.694 ± 0.092

7.196 ± 0.071

9.411 ± 0.134

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.524 ± 0.043

4.474 ± 0.042

3.479 ± 0.078

4.282 ± 0.056

3.659 ± 0.051

5.928 ± 0.054

6.046 ± 0.134

7.377 ± 0.076

0.884 ± 0.023

3.77 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski