Corynebacterium ureicelerivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1837 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A077HJ26|A0A077HJ26_9CORY HisKA_3 domain-containing protein OS=Corynebacterium ureicelerivorans OX=401472 GN=CUREI_01290 PE=4 SV=1
MM1 pKa = 7.54NYY3 pKa = 10.6DD4 pKa = 4.44DD5 pKa = 5.78MMPLDD10 pKa = 5.01PFADD14 pKa = 4.24DD15 pKa = 4.78PNDD18 pKa = 3.74PASFIDD24 pKa = 4.21DD25 pKa = 3.93EE26 pKa = 4.5EE27 pKa = 4.67HH28 pKa = 7.52AEE30 pKa = 3.95PLSPEE35 pKa = 3.66EE36 pKa = 3.83RR37 pKa = 11.84VAVIQDD43 pKa = 3.88LSHH46 pKa = 7.09VRR48 pKa = 11.84DD49 pKa = 3.83AQRR52 pKa = 11.84MLKK55 pKa = 9.96PRR57 pKa = 11.84GILGVSFLCEE67 pKa = 4.15DD68 pKa = 4.5CDD70 pKa = 3.92QVHH73 pKa = 6.07YY74 pKa = 10.52YY75 pKa = 10.3DD76 pKa = 4.05WEE78 pKa = 3.95IMEE81 pKa = 4.48QNMIASLNNQLPPVHH96 pKa = 6.58EE97 pKa = 4.56PSANPNVEE105 pKa = 5.44AYY107 pKa = 10.61VPWDD111 pKa = 3.39YY112 pKa = 12.19AMGYY116 pKa = 10.59LDD118 pKa = 4.04GLEE121 pKa = 4.1GRR123 pKa = 4.8

Molecular weight: 14.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A077HG51|A0A077HG51_9CORY DNA replication and repair protein RecF OS=Corynebacterium ureicelerivorans OX=401472 GN=recF PE=3 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.93RR4 pKa = 11.84TYY6 pKa = 10.0QPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.24HH17 pKa = 4.6GFRR20 pKa = 11.84ARR22 pKa = 11.84MQTRR26 pKa = 11.84AGRR29 pKa = 11.84AIVSARR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.67KK38 pKa = 10.5GRR40 pKa = 11.84ANLTAA45 pKa = 4.8

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1837

0

1837

572859

40

2375

311.8

33.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.436 ± 0.076

0.658 ± 0.015

6.42 ± 0.05

6.579 ± 0.048

3.175 ± 0.039

8.586 ± 0.048

2.069 ± 0.028

4.531 ± 0.045

3.053 ± 0.052

9.302 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.282 ± 0.026

2.704 ± 0.034

5.003 ± 0.036

3.284 ± 0.031

6.508 ± 0.062

5.17 ± 0.035

5.983 ± 0.041

8.646 ± 0.053

1.352 ± 0.027

2.258 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski