Tomato yellow leaf curl betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 4.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A9NJ54|A9NJ54_9VIRU C1 protein OS=Tomato yellow leaf curl betasatellite OX=391090 GN=BC1 PE=4 SV=1
MM1 pKa = 7.23TIKK4 pKa = 10.74YY5 pKa = 9.04NNKK8 pKa = 9.14RR9 pKa = 11.84GMEE12 pKa = 3.75FTIDD16 pKa = 3.48VKK18 pKa = 11.01INEE21 pKa = 4.5DD22 pKa = 3.29NSILVHH28 pKa = 6.89IEE30 pKa = 3.83LFSTQSPALVKK41 pKa = 10.49KK42 pKa = 10.69NFMIPYY48 pKa = 8.43GHH50 pKa = 7.47DD51 pKa = 3.85GIIPPFDD58 pKa = 3.98FNALEE63 pKa = 4.1EE64 pKa = 5.12GIQNLLQIMYY74 pKa = 9.39KK75 pKa = 10.55DD76 pKa = 3.29SDD78 pKa = 3.2IGEE81 pKa = 4.18FRR83 pKa = 11.84QEE85 pKa = 4.42DD86 pKa = 3.94MVEE89 pKa = 4.28TIDD92 pKa = 4.35LLMMEE97 pKa = 5.26EE98 pKa = 4.57APLVDD103 pKa = 3.64IRR105 pKa = 11.84IGDD108 pKa = 3.88EE109 pKa = 3.97YY110 pKa = 11.54DD111 pKa = 3.26VCTKK115 pKa = 10.67VCVV118 pKa = 3.39

Molecular weight: 13.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A9NJ54|A9NJ54_9VIRU C1 protein OS=Tomato yellow leaf curl betasatellite OX=391090 GN=BC1 PE=4 SV=1
MM1 pKa = 7.23TIKK4 pKa = 10.74YY5 pKa = 9.04NNKK8 pKa = 9.14RR9 pKa = 11.84GMEE12 pKa = 3.75FTIDD16 pKa = 3.48VKK18 pKa = 11.01INEE21 pKa = 4.5DD22 pKa = 3.29NSILVHH28 pKa = 6.89IEE30 pKa = 3.83LFSTQSPALVKK41 pKa = 10.49KK42 pKa = 10.69NFMIPYY48 pKa = 8.43GHH50 pKa = 7.47DD51 pKa = 3.85GIIPPFDD58 pKa = 3.98FNALEE63 pKa = 4.1EE64 pKa = 5.12GIQNLLQIMYY74 pKa = 9.39KK75 pKa = 10.55DD76 pKa = 3.29SDD78 pKa = 3.2IGEE81 pKa = 4.18FRR83 pKa = 11.84QEE85 pKa = 4.42DD86 pKa = 3.94MVEE89 pKa = 4.28TIDD92 pKa = 4.35LLMMEE97 pKa = 5.26EE98 pKa = 4.57APLVDD103 pKa = 3.64IRR105 pKa = 11.84IGDD108 pKa = 3.88EE109 pKa = 3.97YY110 pKa = 11.54DD111 pKa = 3.26VCTKK115 pKa = 10.67VCVV118 pKa = 3.39

Molecular weight: 13.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

118

118

118

118.0

13.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.542 ± 0.0

1.695 ± 0.0

9.322 ± 0.0

9.322 ± 0.0

5.085 ± 0.0

5.085 ± 0.0

1.695 ± 0.0

11.864 ± 0.0

5.932 ± 0.0

7.627 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.932 ± 0.0

5.932 ± 0.0

4.237 ± 0.0

3.39 ± 0.0

2.542 ± 0.0

3.39 ± 0.0

4.237 ± 0.0

6.78 ± 0.0

0.0 ± 0.0

3.39 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski