Dehalogenimonas alkenigignens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Dehalococcoidia; Dehalogenimonas

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1927 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0W0GKE3|A0A0W0GKE3_9CHLR Uncharacterized protein OS=Dehalogenimonas alkenigignens OX=1217799 GN=DEALK_18410 PE=4 SV=1
MM1 pKa = 7.23KK2 pKa = 10.3RR3 pKa = 11.84VFKK6 pKa = 10.77KK7 pKa = 9.88FLVFAGVLAAVAAVLVPALAVPVSAQATNFSLNGYY42 pKa = 8.75RR43 pKa = 11.84VTVGGGGAYY52 pKa = 9.97SAGWTGGNLGNQWAEE67 pKa = 4.41GEE69 pKa = 4.3WVPYY73 pKa = 10.3KK74 pKa = 10.82LVITNVQTNYY84 pKa = 10.13PGLANFPDD92 pKa = 3.71IVLSFDD98 pKa = 3.27FHH100 pKa = 7.11DD101 pKa = 4.33ANGMFVDD108 pKa = 6.12LIRR111 pKa = 11.84GIQVGTTDD119 pKa = 3.62LTDD122 pKa = 3.63LQGFPTSGGGPQANNIAGAQLGQNDD147 pKa = 4.14PDD149 pKa = 3.01EE150 pKa = 4.43WAWTNFALLNLPNEE164 pKa = 4.29QVNRR168 pKa = 11.84SLVPLGDD175 pKa = 4.29LDD177 pKa = 4.2VAPGTDD183 pKa = 2.49KK184 pKa = 11.01HH185 pKa = 6.61VFIIHH190 pKa = 7.03PSDD193 pKa = 3.12ILGKK197 pKa = 10.79GGVTVDD203 pKa = 3.14SNTIVIYY210 pKa = 9.96YY211 pKa = 8.76QAHH214 pKa = 6.78LSRR217 pKa = 11.84TFVWSNALQDD227 pKa = 5.09FYY229 pKa = 11.76ATDD232 pKa = 3.66ADD234 pKa = 4.07LAKK237 pKa = 10.25WGGYY241 pKa = 9.96LYY243 pKa = 10.22ATDD246 pKa = 3.74AWPTSVQNGSGYY258 pKa = 9.93QPGSSGHH265 pKa = 4.92MHH267 pKa = 6.98LEE269 pKa = 4.15VEE271 pKa = 4.66GTGQQDD277 pKa = 3.63VPIPIPPKK285 pKa = 9.89PVGLIDD291 pKa = 4.26GYY293 pKa = 11.3KK294 pKa = 10.33FEE296 pKa = 6.24DD297 pKa = 3.99RR298 pKa = 11.84DD299 pKa = 4.22ADD301 pKa = 4.49HH302 pKa = 7.04IWDD305 pKa = 4.48PGEE308 pKa = 3.82PAIPGWDD315 pKa = 2.52IHH317 pKa = 6.32MYY319 pKa = 10.28SVLEE323 pKa = 3.95GGIVIDD329 pKa = 3.69VHH331 pKa = 5.65EE332 pKa = 4.53TTDD335 pKa = 3.42ANGFYY340 pKa = 10.46SFPNLTEE347 pKa = 4.51GIWYY351 pKa = 9.39IGEE354 pKa = 4.22HH355 pKa = 5.98VGPGDD360 pKa = 3.75PPLAGWTQTFPYY372 pKa = 10.27NVGNVPPGANSSLIDD387 pKa = 3.69NFPNNIKK394 pKa = 10.5AAIGPAHH401 pKa = 6.29LAEE404 pKa = 4.55WGWIVSLTDD413 pKa = 3.66AAPMQHH419 pKa = 5.79NVNFGNVSFATKK431 pKa = 9.85TGTKK435 pKa = 10.12FHH437 pKa = 7.4DD438 pKa = 4.07LNANGVWDD446 pKa = 3.86NGEE449 pKa = 4.31PGLGGWTIYY458 pKa = 10.94VDD460 pKa = 3.72YY461 pKa = 10.89NNNGVFDD468 pKa = 4.42AATEE472 pKa = 4.13PSAVTAGDD480 pKa = 3.42GTYY483 pKa = 10.35SINNVAPGTWRR494 pKa = 11.84VRR496 pKa = 11.84EE497 pKa = 3.95VLQAGWFASYY507 pKa = 9.22PATSDD512 pKa = 2.78AFGRR516 pKa = 11.84YY517 pKa = 8.92HH518 pKa = 7.38EE519 pKa = 4.33EE520 pKa = 4.12TFVGGQTYY528 pKa = 10.55SGNDD532 pKa = 3.2FGNWTTASKK541 pKa = 10.97SGMKK545 pKa = 10.27FEE547 pKa = 5.91DD548 pKa = 3.6MNADD552 pKa = 3.42GDD554 pKa = 4.16KK555 pKa = 11.0DD556 pKa = 4.4AEE558 pKa = 4.35DD559 pKa = 3.45TGLAGWVIYY568 pKa = 10.79VDD570 pKa = 3.95YY571 pKa = 10.88NDD573 pKa = 5.36NGVKK577 pKa = 10.22DD578 pKa = 3.97ANEE581 pKa = 4.1PFATTAADD589 pKa = 3.53GTYY592 pKa = 9.62TITGINPGTWKK603 pKa = 10.5VKK605 pKa = 10.18EE606 pKa = 4.02VAQAGWTQSYY616 pKa = 9.25PVSGYY621 pKa = 10.38HH622 pKa = 6.58EE623 pKa = 4.31EE624 pKa = 4.46TFTSGAALTGNDD636 pKa = 3.26FGNWTTAEE644 pKa = 3.82KK645 pKa = 10.46SGYY648 pKa = 9.59KK649 pKa = 10.54FNDD652 pKa = 3.45KK653 pKa = 10.75YY654 pKa = 11.42DD655 pKa = 3.98ADD657 pKa = 4.16GVRR660 pKa = 11.84DD661 pKa = 3.71ADD663 pKa = 3.86GVDD666 pKa = 3.82NILGNADD673 pKa = 4.3DD674 pKa = 4.75EE675 pKa = 4.8VLLSGWTIRR684 pKa = 11.84IYY686 pKa = 11.13EE687 pKa = 4.12DD688 pKa = 3.47TNGNGLLDD696 pKa = 3.66QAEE699 pKa = 4.37YY700 pKa = 10.96DD701 pKa = 3.69AGPLFTDD708 pKa = 3.42VTDD711 pKa = 3.6VNGAYY716 pKa = 10.42SFTVNPGKK724 pKa = 10.88YY725 pKa = 9.02IVVEE729 pKa = 4.11VMQDD733 pKa = 3.16KK734 pKa = 11.07LGTPYY739 pKa = 10.21YY740 pKa = 10.04QSYY743 pKa = 8.71PATPVLAGGLNTGTEE758 pKa = 4.07LLGANGHH765 pKa = 6.27AVTLVSSQIDD775 pKa = 3.86NNNHH779 pKa = 6.22FGNYY783 pKa = 7.39WPHH786 pKa = 4.62TTMTLFDD793 pKa = 4.67FVWEE797 pKa = 4.46TTADD801 pKa = 3.73GNVTLTISDD810 pKa = 3.99TNDD813 pKa = 2.87GDD815 pKa = 4.36VNLTDD820 pKa = 3.5AHH822 pKa = 5.78VHH824 pKa = 6.05LLANDD829 pKa = 3.37VEE831 pKa = 5.05YY832 pKa = 9.91PFSPISTPTSGDD844 pKa = 3.33DD845 pKa = 3.38GDD847 pKa = 5.67GIFEE851 pKa = 5.26PGEE854 pKa = 3.78TWTWIVYY861 pKa = 7.49VTITQDD867 pKa = 3.18TTFSTWGHH875 pKa = 6.02GEE877 pKa = 4.09DD878 pKa = 3.91PFGNTVDD885 pKa = 3.7YY886 pKa = 9.73PQYY889 pKa = 8.4QSEE892 pKa = 4.33YY893 pKa = 8.84AEE895 pKa = 4.1VFVEE899 pKa = 4.28VNEE902 pKa = 4.13ATRR905 pKa = 11.84TQGFWSTHH913 pKa = 4.8LDD915 pKa = 3.48FTEE918 pKa = 4.69MIFDD922 pKa = 4.3NYY924 pKa = 10.52TGDD927 pKa = 4.24EE928 pKa = 4.14VDD930 pKa = 3.5NDD932 pKa = 3.45NVGFIDD938 pKa = 4.63LGWRR942 pKa = 11.84QITNINDD949 pKa = 3.23LMGVFWANNAKK960 pKa = 10.58NSDD963 pKa = 3.27GSNRR967 pKa = 11.84SALCQARR974 pKa = 11.84IIASNQALAALLNAAMPGGAPLPAGYY1000 pKa = 10.19SPAEE1004 pKa = 3.64IAAILGGTDD1013 pKa = 2.81IPAIKK1018 pKa = 9.85MLGSVLGAYY1027 pKa = 10.21NEE1029 pKa = 5.04DD1030 pKa = 3.78GDD1032 pKa = 5.8DD1033 pKa = 3.75VALDD1037 pKa = 4.78PILGSTGKK1045 pKa = 10.5ANPQQAKK1052 pKa = 9.83ALANIGFADD1061 pKa = 4.31CNIQTSLVVAALPASVVKK1079 pKa = 8.78NTPVNITFTLNTVNDD1094 pKa = 3.42VGAAGGTFTVIASKK1108 pKa = 10.69DD1109 pKa = 3.55SKK1111 pKa = 10.99FPNGANKK1118 pKa = 9.64TITVGSGAVNDD1129 pKa = 3.83MPFNGGVSFTPTSAGTWYY1147 pKa = 10.13IKK1149 pKa = 9.12ITYY1152 pKa = 10.02SGDD1155 pKa = 3.1GEE1157 pKa = 4.65NYY1159 pKa = 9.52GGCSVIVTLVVTNSS1173 pKa = 2.91

Molecular weight: 125.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0W0GG97|A0A0W0GG97_9CHLR Probable transaldolase OS=Dehalogenimonas alkenigignens OX=1217799 GN=tal PE=3 SV=1
MM1 pKa = 7.83PSLKK5 pKa = 10.7AFFTNWWAPMPLRR18 pKa = 11.84RR19 pKa = 11.84KK20 pKa = 9.64IYY22 pKa = 10.32LAFRR26 pKa = 11.84NNWIKK31 pKa = 10.27ISRR34 pKa = 11.84RR35 pKa = 11.84QSCCGHH41 pKa = 6.75PGEE44 pKa = 5.14PGCC47 pKa = 5.73

Molecular weight: 5.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1927

0

1927

551133

13

2090

286.0

31.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.235 ± 0.069

1.188 ± 0.028

5.089 ± 0.037

6.244 ± 0.062

3.936 ± 0.04

8.132 ± 0.049

1.864 ± 0.023

6.417 ± 0.051

4.791 ± 0.058

10.047 ± 0.078

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.408 ± 0.024

3.186 ± 0.041

4.838 ± 0.043

3.022 ± 0.027

6.103 ± 0.057

5.925 ± 0.048

5.375 ± 0.065

7.298 ± 0.044

1.158 ± 0.022

2.744 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski