Gata virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z2CF63|A0A2Z2CF63_9RHAB Glycoprotein OS=Gata virus OX=1911435 PE=3 SV=1
MM1 pKa = 7.79KK2 pKa = 9.17KK3 pKa = 7.62TQQHH7 pKa = 5.05SLRR10 pKa = 11.84PIMDD14 pKa = 3.79EE15 pKa = 3.9LNEE18 pKa = 4.09KK19 pKa = 10.13FKK21 pKa = 11.35QFLDD25 pKa = 3.65DD26 pKa = 3.95GARR29 pKa = 11.84QNILSDD35 pKa = 3.37EE36 pKa = 4.63FKK38 pKa = 10.85RR39 pKa = 11.84DD40 pKa = 3.08VNAILGEE47 pKa = 4.18MEE49 pKa = 4.55DD50 pKa = 4.19EE51 pKa = 4.39EE52 pKa = 5.05MPLAPNDD59 pKa = 3.8HH60 pKa = 6.38SPVRR64 pKa = 11.84QSTSLYY70 pKa = 10.93SPDD73 pKa = 4.62HH74 pKa = 7.08DD75 pKa = 5.13LDD77 pKa = 3.98TYY79 pKa = 10.9TDD81 pKa = 4.42PGCQSPPGSVCDD93 pKa = 4.13PLDD96 pKa = 5.06DD97 pKa = 4.23EE98 pKa = 5.11ACSILGEE105 pKa = 4.12LEE107 pKa = 4.47RR108 pKa = 11.84IVTLSDD114 pKa = 4.7PGNQWEE120 pKa = 4.62GASHH124 pKa = 6.92IVWTSPGVYY133 pKa = 8.46STGRR137 pKa = 11.84EE138 pKa = 3.82FQQAKK143 pKa = 8.5TLLKK147 pKa = 10.57SVLRR151 pKa = 11.84SMNRR155 pKa = 11.84DD156 pKa = 2.86SGLNYY161 pKa = 9.8VLNVGKK167 pKa = 9.58PDD169 pKa = 3.41TLFITRR175 pKa = 11.84PDD177 pKa = 3.48SLTVARR183 pKa = 11.84NVRR186 pKa = 11.84PKK188 pKa = 10.16IPEE191 pKa = 3.83NLFVDD196 pKa = 3.43NDD198 pKa = 2.84KK199 pKa = 11.22WEE201 pKa = 4.75FIKK204 pKa = 11.03AQFASGIEE212 pKa = 4.09LKK214 pKa = 10.96DD215 pKa = 3.09VDD217 pKa = 4.6EE218 pKa = 4.9PGKK221 pKa = 8.5TLVVSFATPGFKK233 pKa = 10.49EE234 pKa = 3.91GDD236 pKa = 3.24IKK238 pKa = 11.29LSFLNGNTTVRR249 pKa = 11.84SILEE253 pKa = 4.55DD254 pKa = 2.4IWRR257 pKa = 11.84AMGRR261 pKa = 11.84WAYY264 pKa = 9.68ISSSYY269 pKa = 10.55HH270 pKa = 5.45VDD272 pKa = 4.22GIVVV276 pKa = 3.73

Molecular weight: 30.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A336USW8|A0A336USW8_9RHAB Matrix protein OS=Gata virus OX=1911435 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 9.22KK3 pKa = 8.4TRR5 pKa = 11.84TPNRR9 pKa = 11.84TEE11 pKa = 3.48MLSRR15 pKa = 11.84FRR17 pKa = 11.84SKK19 pKa = 11.24NKK21 pKa = 10.6DD22 pKa = 3.01NDD24 pKa = 4.13AGSSDD29 pKa = 3.78YY30 pKa = 9.9WANPPNKK37 pKa = 9.05NPEE40 pKa = 3.74MSMPNSPVYY49 pKa = 10.92SFTGSWAISGRR60 pKa = 11.84FEE62 pKa = 3.92IRR64 pKa = 11.84TKK66 pKa = 10.68IPIQSGAKK74 pKa = 10.21LLDD77 pKa = 5.24LIGAWLDD84 pKa = 4.05GYY86 pKa = 10.67SGSYY90 pKa = 9.63SFHH93 pKa = 7.0GIFTGLYY100 pKa = 9.96LLMALHH106 pKa = 6.81SLPSQEE112 pKa = 3.89NQTYY116 pKa = 10.06VYY118 pKa = 10.93SLDD121 pKa = 3.29LSKK124 pKa = 10.84RR125 pKa = 11.84IAIQVTRR132 pKa = 11.84QDD134 pKa = 4.08VINQEE139 pKa = 4.58ADD141 pKa = 3.72LSWVNQEE148 pKa = 3.8GTGLEE153 pKa = 3.75WCVIKK158 pKa = 10.18FKK160 pKa = 10.65IHH162 pKa = 6.57LKK164 pKa = 7.28PTRR167 pKa = 11.84RR168 pKa = 11.84MCIPFADD175 pKa = 4.64AYY177 pKa = 8.42KK178 pKa = 10.6QPMHH182 pKa = 6.84TGADD186 pKa = 3.52PPPFEE191 pKa = 3.99EE192 pKa = 5.24VYY194 pKa = 10.66FRR196 pKa = 11.84FWNPQSGYY204 pKa = 10.67CSIIHH209 pKa = 6.53

Molecular weight: 23.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3581

209

2135

716.2

81.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.937 ± 0.682

1.759 ± 0.504

5.892 ± 0.475

4.971 ± 0.23

4.524 ± 0.289

5.781 ± 0.154

2.457 ± 0.317

6.898 ± 0.449

6.171 ± 0.329

9.969 ± 1.135

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.597 ± 0.303

5.334 ± 0.4

4.775 ± 0.6

3.239 ± 0.207

5.166 ± 0.456

9.69 ± 0.254

5.613 ± 0.473

5.781 ± 0.476

1.787 ± 0.146

3.658 ± 0.387
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski