Clerodendron golden mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A5H161|A5H161_9GEMI Nuclear shuttle protein OS=Clerodendron golden mosaic virus OX=390438 GN=BV1 PE=3 SV=1
MM1 pKa = 7.01LTSHH5 pKa = 7.01TGLSDD10 pKa = 2.92MWDD13 pKa = 3.41PLVNDD18 pKa = 4.5FPEE21 pKa = 4.69TVHH24 pKa = 7.1GLRR27 pKa = 11.84CMLAVKK33 pKa = 9.32YY34 pKa = 10.21LKK36 pKa = 10.48YY37 pKa = 10.79VEE39 pKa = 4.49STYY42 pKa = 11.35SPDD45 pKa = 3.14TLGYY49 pKa = 10.84DD50 pKa = 4.78LIRR53 pKa = 11.84DD54 pKa = 4.52LILVVRR60 pKa = 11.84AKK62 pKa = 10.88NYY64 pKa = 9.84GEE66 pKa = 3.59ASRR69 pKa = 11.84RR70 pKa = 11.84YY71 pKa = 8.44NHH73 pKa = 6.23FHH75 pKa = 6.26TRR77 pKa = 11.84LQGSTEE83 pKa = 3.94AEE85 pKa = 3.74LRR87 pKa = 11.84QPVSEE92 pKa = 4.49PCACPHH98 pKa = 6.68CPRR101 pKa = 11.84HH102 pKa = 5.62TKK104 pKa = 9.12TVMGQSAHH112 pKa = 4.79VQEE115 pKa = 4.92AQDD118 pKa = 3.2II119 pKa = 4.06

Molecular weight: 13.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A5H160|A5H160_9GEMI Protein V2 OS=Clerodendron golden mosaic virus OX=390438 GN=AV2 PE=3 SV=1
MM1 pKa = 7.62PKK3 pKa = 9.84IIFSLIHH10 pKa = 6.02NAHH13 pKa = 5.11SQKK16 pKa = 10.84KK17 pKa = 9.76KK18 pKa = 10.18LLPDD22 pKa = 3.9FWQLLHH28 pKa = 6.62QPIKK32 pKa = 10.15NSSRR36 pKa = 11.84FAEE39 pKa = 4.45NSTKK43 pKa = 9.92MGALISTFLCNSRR56 pKa = 11.84ANSNARR62 pKa = 11.84INDD65 pKa = 3.25SSIWYY70 pKa = 6.72PQQDD74 pKa = 3.87QPTSILTFKK83 pKa = 10.22GQNRR87 pKa = 11.84VPTSSPIWIRR97 pKa = 11.84TGTHH101 pKa = 4.79WNGEE105 pKa = 4.27NSRR108 pKa = 11.84STGDD112 pKa = 3.23LHH114 pKa = 8.01EE115 pKa = 4.55EE116 pKa = 3.92VHH118 pKa = 6.05RR119 pKa = 11.84QLMMLTPRR127 pKa = 11.84RR128 pKa = 11.84LTLAVSTKK136 pKa = 10.53LLRR139 pKa = 11.84SLKK142 pKa = 10.43NN143 pKa = 3.27

Molecular weight: 16.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1700

119

355

212.5

24.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.176 ± 0.504

1.882 ± 0.208

4.647 ± 0.496

4.0 ± 0.479

4.294 ± 0.406

4.941 ± 0.243

3.647 ± 0.825

5.941 ± 0.719

5.059 ± 0.602

7.412 ± 0.726

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.824 ± 0.231

5.824 ± 0.605

5.529 ± 0.337

4.353 ± 0.476

7.529 ± 0.952

9.059 ± 1.188

6.765 ± 0.335

6.529 ± 0.934

1.294 ± 0.186

4.294 ± 0.698
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski