Sutterella parvirubra YIT 11816

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella; Sutterella parvirubra

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2483 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H3KH85|H3KH85_9BURK Branched-chain amino acid ABC transporter permease protein OS=Sutterella parvirubra YIT 11816 OX=762967 GN=HMPREF9440_02126 PE=4 SV=1
AA1 pKa = 7.21LTAATAGEE9 pKa = 4.62AIKK12 pKa = 10.86LDD14 pKa = 3.75DD15 pKa = 5.27PYY17 pKa = 11.68SVTAGSQSNGKK28 pKa = 10.05LNVTISLTNSADD40 pKa = 3.28VSEE43 pKa = 5.09TYY45 pKa = 10.67DD46 pKa = 3.98LPIPVCSSQSS56 pKa = 3.06

Molecular weight: 5.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H3KEZ4|H3KEZ4_9BURK Uncharacterized protein OS=Sutterella parvirubra YIT 11816 OX=762967 GN=HMPREF9440_01309 PE=4 SV=1
MM1 pKa = 7.5KK2 pKa = 10.06PRR4 pKa = 11.84VFRR7 pKa = 11.84RR8 pKa = 11.84TAGFAPKK15 pKa = 9.8RR16 pKa = 11.84AQIPRR21 pKa = 11.84PRR23 pKa = 11.84SLPKK27 pKa = 9.67KK28 pKa = 9.7RR29 pKa = 11.84PRR31 pKa = 11.84AGLSHH36 pKa = 7.43IFTPP40 pKa = 4.9

Molecular weight: 4.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2483

0

2483

698141

29

1883

281.2

30.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.144 ± 0.084

1.052 ± 0.02

5.393 ± 0.045

6.792 ± 0.061

3.872 ± 0.033

8.242 ± 0.054

1.87 ± 0.025

4.509 ± 0.039

4.179 ± 0.039

9.678 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.671 ± 0.026

2.646 ± 0.03

5.18 ± 0.04

2.528 ± 0.027

7.178 ± 0.053

5.087 ± 0.036

5.693 ± 0.041

7.838 ± 0.045

1.36 ± 0.022

2.087 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski