Chaetoceros tenuissimus DNA virus type-II

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses

Average proteome isoelectric point is 7.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B6VL42|A0A0B6VL42_9VIRU Uncharacterized protein OS=Chaetoceros tenuissimus DNA virus type-II OX=1516127 PE=4 SV=1
MM1 pKa = 7.34VFRR4 pKa = 11.84TMSDD8 pKa = 2.61NSFDD12 pKa = 3.54IQQIICDD19 pKa = 4.11EE20 pKa = 4.16ASIDD24 pKa = 3.83CSITIDD30 pKa = 3.75TQPVDD35 pKa = 4.25DD36 pKa = 5.39LSASTEE42 pKa = 3.83YY43 pKa = 11.03RR44 pKa = 11.84EE45 pKa = 4.1VSNNTRR51 pKa = 11.84IGRR54 pKa = 11.84AILTYY59 pKa = 9.81FPPTSEE65 pKa = 4.17SKK67 pKa = 10.28YY68 pKa = 10.51LEE70 pKa = 4.19PEE72 pKa = 4.81FILGRR77 pKa = 11.84ANVHH81 pKa = 6.35RR82 pKa = 11.84VSNWFSQYY90 pKa = 8.92EE91 pKa = 4.14LCPEE95 pKa = 4.18TEE97 pKa = 4.08RR98 pKa = 11.84KK99 pKa = 9.65HH100 pKa = 5.06IHH102 pKa = 6.38AYY104 pKa = 10.62VEE106 pKa = 4.96FKK108 pKa = 10.95HH109 pKa = 5.91SVRR112 pKa = 11.84PFFLTLDD119 pKa = 3.9TLFKK123 pKa = 10.94SHH125 pKa = 7.69DD126 pKa = 4.26LGWDD130 pKa = 3.03CRR132 pKa = 11.84TARR135 pKa = 11.84KK136 pKa = 7.62TSKK139 pKa = 10.25DD140 pKa = 3.42QRR142 pKa = 11.84QGAINYY148 pKa = 6.03VHH150 pKa = 7.01KK151 pKa = 10.9LEE153 pKa = 4.29SRR155 pKa = 11.84MDD157 pKa = 3.56GFDD160 pKa = 3.61PYY162 pKa = 10.09TWPGNEE168 pKa = 4.39DD169 pKa = 3.46KK170 pKa = 10.89DD171 pKa = 4.61LKK173 pKa = 10.64FDD175 pKa = 3.85PSFVRR180 pKa = 11.84GNRR183 pKa = 11.84KK184 pKa = 8.87KK185 pKa = 10.62DD186 pKa = 3.18KK187 pKa = 10.83RR188 pKa = 11.84KK189 pKa = 10.3ARR191 pKa = 11.84DD192 pKa = 3.38DD193 pKa = 4.5AIEE196 pKa = 3.9EE197 pKa = 3.69QRR199 pKa = 11.84QYY201 pKa = 11.01IEE203 pKa = 4.12SKK205 pKa = 9.72PRR207 pKa = 11.84IWTWDD212 pKa = 3.48QIVHH216 pKa = 6.07EE217 pKa = 4.58SEE219 pKa = 4.04EE220 pKa = 4.54SKK222 pKa = 11.11KK223 pKa = 10.96LLVTCSWGKK232 pKa = 9.75KK233 pKa = 6.24YY234 pKa = 10.62HH235 pKa = 6.38EE236 pKa = 4.89GRR238 pKa = 11.84HH239 pKa = 5.65AEE241 pKa = 4.14DD242 pKa = 3.29KK243 pKa = 11.0RR244 pKa = 11.84RR245 pKa = 11.84DD246 pKa = 3.52VTDD249 pKa = 3.59VIIYY253 pKa = 9.63YY254 pKa = 10.43GAGGTGKK261 pKa = 7.4TTMCMEE267 pKa = 4.92HH268 pKa = 7.44DD269 pKa = 4.07STSSLEE275 pKa = 4.1PRR277 pKa = 11.84VEE279 pKa = 3.56RR280 pKa = 11.84YY281 pKa = 8.52YY282 pKa = 10.96RR283 pKa = 11.84RR284 pKa = 11.84NPDD287 pKa = 4.5DD288 pKa = 4.03GNFWGGGRR296 pKa = 11.84TAYY299 pKa = 9.76KK300 pKa = 8.82GQRR303 pKa = 11.84VIHH306 pKa = 5.98FEE308 pKa = 3.94EE309 pKa = 5.09FGGQEE314 pKa = 3.6PFSRR318 pKa = 11.84LKK320 pKa = 10.11EE321 pKa = 3.9VCDD324 pKa = 3.38IGKK327 pKa = 9.09PGPSVNIKK335 pKa = 10.38GAGVDD340 pKa = 4.22LNHH343 pKa = 6.56HH344 pKa = 5.34TVIFSSNIHH353 pKa = 5.46PAGWYY358 pKa = 8.22RR359 pKa = 11.84HH360 pKa = 5.44LWKK363 pKa = 10.38DD364 pKa = 3.92DD365 pKa = 3.65PKK367 pKa = 10.84QFHH370 pKa = 6.3PFWRR374 pKa = 11.84RR375 pKa = 11.84VTQVKK380 pKa = 8.48FFPSHH385 pKa = 6.74RR386 pKa = 11.84PDD388 pKa = 3.07GTLNIPDD395 pKa = 4.93EE396 pKa = 4.56DD397 pKa = 4.34TPPYY401 pKa = 10.44IIDD404 pKa = 3.56QTDD407 pKa = 2.76EE408 pKa = 4.02WKK410 pKa = 10.77EE411 pKa = 3.69FAGDD415 pKa = 3.4YY416 pKa = 9.62SKK418 pKa = 11.65CMDD421 pKa = 4.39HH422 pKa = 8.2ADD424 pKa = 3.15IHH426 pKa = 5.74WPVRR430 pKa = 11.84EE431 pKa = 3.92VAVEE435 pKa = 4.03GFSASFGHH443 pKa = 5.68SHH445 pKa = 4.8QTQRR449 pKa = 11.84SS450 pKa = 3.49

Molecular weight: 52.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B6VL42|A0A0B6VL42_9VIRU Uncharacterized protein OS=Chaetoceros tenuissimus DNA virus type-II OX=1516127 PE=4 SV=1
MM1 pKa = 6.72VRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84GGKK8 pKa = 6.81TAGSKK13 pKa = 9.5RR14 pKa = 11.84PKK16 pKa = 9.54MSSKK20 pKa = 10.78NFGANRR26 pKa = 11.84KK27 pKa = 9.23RR28 pKa = 11.84DD29 pKa = 3.58FRR31 pKa = 11.84RR32 pKa = 11.84PARR35 pKa = 11.84KK36 pKa = 9.57SKK38 pKa = 10.47AKK40 pKa = 9.87KK41 pKa = 9.05ARR43 pKa = 11.84SMAPAKK49 pKa = 8.89TVRR52 pKa = 11.84KK53 pKa = 8.32STTAGAHH60 pKa = 5.57SKK62 pKa = 10.22HH63 pKa = 6.23FSVIGNPFSKK73 pKa = 9.75ATQQPQIPDD82 pKa = 2.99GRR84 pKa = 11.84MLEE87 pKa = 4.2SLPRR91 pKa = 11.84RR92 pKa = 11.84CQLVTEE98 pKa = 4.4IRR100 pKa = 11.84NNVTVGSNPTYY111 pKa = 10.63ILVAPSLGLAFQAYY125 pKa = 9.86QDD127 pKa = 3.89TNVPGGLDD135 pKa = 3.21SSVYY139 pKa = 9.73GLQNRR144 pKa = 11.84GCTVRR149 pKa = 11.84ANLSATSIEE158 pKa = 4.31NYY160 pKa = 10.47NDD162 pKa = 3.07IAKK165 pKa = 9.27WRR167 pKa = 11.84IVSQGINLKK176 pKa = 10.42LNNVEE181 pKa = 4.74DD182 pKa = 4.89EE183 pKa = 4.05NDD185 pKa = 3.08GWYY188 pKa = 8.29EE189 pKa = 3.82ACRR192 pKa = 11.84FQHH195 pKa = 6.89DD196 pKa = 3.7WTPDD200 pKa = 3.54EE201 pKa = 4.29LCLRR205 pKa = 11.84STEE208 pKa = 4.22NDD210 pKa = 2.89ASTISQDD217 pKa = 2.91EE218 pKa = 4.35DD219 pKa = 3.75LVMGVISSSFMNGALNTIGNNMVEE243 pKa = 4.01QRR245 pKa = 11.84GYY247 pKa = 11.32EE248 pKa = 3.98SGLLKK253 pKa = 10.6NIHH256 pKa = 6.07KK257 pKa = 10.72RR258 pKa = 11.84MFQLHH263 pKa = 6.56NNTSAIRR270 pKa = 11.84PKK272 pKa = 9.88TLQGQFNYY280 pKa = 10.37GSEE283 pKa = 3.95ITFSGTEE290 pKa = 3.81SEE292 pKa = 5.26ARR294 pKa = 11.84FTDD297 pKa = 3.87VPSNRR302 pKa = 11.84QLVDD306 pKa = 3.89SLWHH310 pKa = 6.55NDD312 pKa = 3.33YY313 pKa = 11.57DD314 pKa = 4.92CILIKK319 pKa = 10.49LYY321 pKa = 10.22PRR323 pKa = 11.84EE324 pKa = 4.06NTGAAGQTGSALIVNAIQNLEE345 pKa = 4.11LQYY348 pKa = 11.37SPTSDD353 pKa = 2.86LSTYY357 pKa = 10.42HH358 pKa = 6.83IANKK362 pKa = 8.51RR363 pKa = 11.84ARR365 pKa = 11.84MVEE368 pKa = 3.73AKK370 pKa = 10.21LDD372 pKa = 3.76KK373 pKa = 11.13KK374 pKa = 11.09NNTDD378 pKa = 3.22AAGEE382 pKa = 4.09PFVPGSSRR390 pKa = 3.14

Molecular weight: 43.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1226

386

450

408.7

46.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.444 ± 1.045

1.06 ± 0.408

7.341 ± 0.868

5.791 ± 0.581

4.323 ± 0.5

7.586 ± 0.663

3.263 ± 0.646

5.465 ± 0.211

7.993 ± 1.407

5.628 ± 0.728

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.039 ± 0.308

4.812 ± 1.199

4.16 ± 0.625

3.752 ± 0.314

6.607 ± 0.703

7.912 ± 0.463

5.628 ± 0.441

5.546 ± 0.242

1.631 ± 0.441

3.018 ± 0.342
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski