Canis familiaris papillomavirus 9

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Chipapillomavirus; Chipapillomavirus 1

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G4XF64|G4XF64_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 9 OX=1087108 GN=E1 PE=3 SV=1
MM1 pKa = 7.39IGKK4 pKa = 9.27DD5 pKa = 2.95ATLRR9 pKa = 11.84DD10 pKa = 3.81IVLEE14 pKa = 4.06EE15 pKa = 4.37QPTPLDD21 pKa = 3.72NLWCDD26 pKa = 3.59EE27 pKa = 4.17EE28 pKa = 4.86LAPSDD33 pKa = 4.41DD34 pKa = 4.44EE35 pKa = 5.18EE36 pKa = 4.86EE37 pKa = 4.08EE38 pKa = 4.46SPPNQNLKK46 pKa = 10.05PFRR49 pKa = 11.84IQTYY53 pKa = 9.85CGTCGRR59 pKa = 11.84GIRR62 pKa = 11.84IVVLCTQDD70 pKa = 4.41GIHH73 pKa = 6.26SLEE76 pKa = 4.16SLLCRR81 pKa = 11.84NTSLCCPTCAATYY94 pKa = 9.87RR95 pKa = 11.84FEE97 pKa = 5.84HH98 pKa = 6.64GGG100 pKa = 3.37

Molecular weight: 11.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G4XF67|G4XF67_9PAPI Minor capsid protein L2 OS=Canis familiaris papillomavirus 9 OX=1087108 GN=L2 PE=3 SV=1
MM1 pKa = 7.4NLFAPPNLLPAQHH14 pKa = 6.71RR15 pKa = 11.84PNTLVQKK22 pKa = 10.66LWDD25 pKa = 4.55LLTGPNGWPEE35 pKa = 3.9EE36 pKa = 4.23VEE38 pKa = 3.92LRR40 pKa = 11.84EE41 pKa = 3.9LGEE44 pKa = 3.94RR45 pKa = 11.84GRR47 pKa = 11.84GRR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84SPCACARR58 pKa = 11.84PPTPQTPPHH67 pKa = 6.09TPPTRR72 pKa = 11.84SRR74 pKa = 11.84RR75 pKa = 11.84RR76 pKa = 11.84HH77 pKa = 5.44RR78 pKa = 11.84SRR80 pKa = 11.84YY81 pKa = 7.5TPPQSDD87 pKa = 3.52STDD90 pKa = 3.29WDD92 pKa = 3.76DD93 pKa = 4.38LQALGACSLTPPLGSPLLTPEE114 pKa = 4.32EE115 pKa = 4.27VWFPRR120 pKa = 11.84SQNSPPVLSPCPGASPLPRR139 pKa = 11.84PSPGPCTPRR148 pKa = 11.84PRR150 pKa = 11.84LLDD153 pKa = 3.79LDD155 pKa = 3.5QDD157 pKa = 3.55QRR159 pKa = 11.84LPHH162 pKa = 6.87PSPLPLPDD170 pKa = 3.86SRR172 pKa = 11.84PSLTQQRR179 pKa = 11.84KK180 pKa = 9.11ALDD183 pKa = 3.23KK184 pKa = 10.99ALRR187 pKa = 11.84QVQKK191 pKa = 10.96DD192 pKa = 3.54AFQLEE197 pKa = 4.28VDD199 pKa = 3.79IGADD203 pKa = 3.29LGRR206 pKa = 11.84FFGKK210 pKa = 10.45LGIAPRR216 pKa = 11.84QQ217 pKa = 3.32

Molecular weight: 24.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2582

100

621

368.9

40.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.468 ± 1.039

2.169 ± 0.601

6.003 ± 0.532

5.693 ± 0.515

3.757 ± 0.496

7.901 ± 0.828

2.091 ± 0.129

3.447 ± 0.382

3.796 ± 0.839

8.869 ± 0.591

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.433 ± 0.226

3.215 ± 0.379

7.978 ± 1.524

4.338 ± 0.482

7.32 ± 0.583

7.397 ± 0.569

6.894 ± 0.247

6.894 ± 1.023

1.549 ± 0.297

2.789 ± 0.357
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski