Rhodovarius sp. CCP-6

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Rhodovarius; unclassified Rhodovarius

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5028 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A437LW05|A0A437LW05_9PROT Tyr recombinase domain-containing protein OS=Rhodovarius sp. CCP-6 OX=1979269 GN=EOD42_25040 PE=4 SV=1
MM1 pKa = 7.4AVEE4 pKa = 4.81LSDD7 pKa = 4.96GGYY10 pKa = 8.31DD11 pKa = 3.88TAWVSANGWTMSYY24 pKa = 10.46GVEE27 pKa = 3.88AGRR30 pKa = 11.84LIGTATEE37 pKa = 4.21LTGNALDD44 pKa = 3.95NVLVANADD52 pKa = 3.68FASAIHH58 pKa = 6.4GGGGNDD64 pKa = 4.52EE65 pKa = 4.13IWGSNQNGDD74 pKa = 4.05VLDD77 pKa = 4.68GGAGDD82 pKa = 3.83DD83 pKa = 3.81VLRR86 pKa = 11.84GGSGVTTFIGGEE98 pKa = 4.13GNDD101 pKa = 3.12QFVVNNVNSVIVEE114 pKa = 4.11KK115 pKa = 10.74AGEE118 pKa = 4.65GIDD121 pKa = 4.01TAWVSADD128 pKa = 2.78GWHH131 pKa = 6.41VSDD134 pKa = 3.46NVEE137 pKa = 3.84IVRR140 pKa = 11.84LFGAAHH146 pKa = 5.69SVVLGTSGAQVVANASGSTITAQAGDD172 pKa = 3.73NVFWGQGGNDD182 pKa = 3.57VFIGGAGNDD191 pKa = 3.1IFYY194 pKa = 10.51SGTGVTQMFGGAGNDD209 pKa = 3.23HH210 pKa = 7.2FIIKK214 pKa = 9.84NAADD218 pKa = 3.56TVVEE222 pKa = 4.22NANGGYY228 pKa = 7.93DD229 pKa = 3.81TAWLEE234 pKa = 4.04VSGWTVAEE242 pKa = 4.13NVEE245 pKa = 4.15VAYY248 pKa = 10.89LSGTANSITGNASGTNLVANSTMASALTAGTGFTIFWGSNYY289 pKa = 9.76GDD291 pKa = 3.56TMKK294 pKa = 10.49IGAGGGNVYY303 pKa = 10.49GYY305 pKa = 11.01GGADD309 pKa = 2.95TFEE312 pKa = 5.35FGPHH316 pKa = 5.76WGLTQVADD324 pKa = 4.52FNHH327 pKa = 6.94AEE329 pKa = 4.04GDD331 pKa = 3.71KK332 pKa = 11.2LDD334 pKa = 4.76FSASGLSMADD344 pKa = 3.38LNVTNYY350 pKa = 10.32SDD352 pKa = 3.33KK353 pKa = 11.13TLIEE357 pKa = 4.47HH358 pKa = 6.54NGEE361 pKa = 3.95QIILYY366 pKa = 10.05GVTSLQASDD375 pKa = 4.45FVFF378 pKa = 4.18

Molecular weight: 38.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A437MF02|A0A437MF02_9PROT Uncharacterized protein OS=Rhodovarius sp. CCP-6 OX=1979269 GN=EOD42_14065 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 8.8IVRR12 pKa = 11.84KK13 pKa = 9.24RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.55GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84NVLAARR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.85GRR39 pKa = 11.84SKK41 pKa = 11.16LSAA44 pKa = 3.74

Molecular weight: 5.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5028

0

5028

1623387

33

3309

322.9

34.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.091 ± 0.054

0.841 ± 0.011

4.952 ± 0.025

5.566 ± 0.03

3.358 ± 0.019

9.262 ± 0.038

2.064 ± 0.017

4.331 ± 0.022

2.187 ± 0.025

10.62 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.688 ± 0.018

2.352 ± 0.024

6.147 ± 0.031

3.22 ± 0.021

7.938 ± 0.04

4.733 ± 0.023

5.119 ± 0.029

7.176 ± 0.027

1.5 ± 0.014

1.854 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski